Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2538 ATGGCCGCCACCGCCGCCGCCGCCACCCAACTCCTACTTCTCTCTCTCCTTTCTCTTGCCACTCTCCTCTCAGCTCAAACTTTTAACATGAACGCCATTGACAGATGCTGGAGATCCAACCCATACTGGCGGAGAAACCGGCAGCAACTCGCCGTTTGTTCAGTGGGTTTCGTCGGAAAAATGACAAACAACATCGGAAGAAACCTCGTACGCTACCAAGTCACCAACCCCACCGACGACCCAATAAACCCCCGCCCGGGTACGCTCCGGTACGGCGCCACCATGATCAAATCCAAAGTTTGGATCACGTTTCGAAACAACATGCAAATCGTGCTTAAAAAACCGCTCATGATCAGCAGCTTCACCGCCATCGACGGCCGTGGCGCCACCGTCCACATCGCCGGAAATGCGTGTCTGATGGTTTCCAAAGCCACTAATATTATAATCCATGGGCTTACTATCCACCACTGCAAGGCCCAGACTGCCGGCCGGGTCATGGGCCCAGATTCGAAGATTATTTCATTGGGACACGTGGACGGTGATGCCATTCGATTGGTGAGTGCTTCTAAGATCTGGATTGACCATAATACCCTTTATCGTTGTGAGGATGGGCTGCTTGACGTCACTAGAGGTTCAACTGACATCACTATTTCCAACAATTGGTTTAGAGACCAAGATAAGGTTATTCTTCTTGGTCATGAGGATGGTTTTATCCTAGATAGGAGCATGAAAGTCACTCTCATCTATAACCATTTCGGACCCAATTGCAACCAAAGGATGCCCAGGATTCGATATGGGTACGCACACGTGGCAAATAATTTGTACCAAGGATGGACACAATACGCAATTGGAGGGAGCATGAATCCTAGTGTCAAGAGTGAATCAAATCTTTTCATTGCATCAAAATCATCCCAGGTAATATGGAGCACAGGGAAAGTAGAGGAGGCAAAGTGGAGGTTTCATTCAGTAAGAGACGTATTTGAAAATGGAGCTTCATTTGCACAAATTGGTGCGGGAAGAGGAGTTAGTGTTAAACCAAATTACAACGTTCAACAGCGATTTCGAGTTGCAGATGCCAAGTGGCTGAGAGCATTGACAAGCTCCTCCGGGGCTTTGCGCTGCTCACCAAACTCAAAATGTTGA 1143 48.29 MAATAAAATQLLLLSLLSLATLLSAQTFNMNAIDRCWRSNPYWRRNRQQLAVCSVGFVGKMTNNIGRNLVRYQVTNPTDDPINPRPGTLRYGATMIKSKVWITFRNNMQIVLKKPLMISSFTAIDGRGATVHIAGNACLMVSKATNIIIHGLTIHHCKAQTAGRVMGPDSKIISLGHVDGDAIRLVSASKIWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHEDGFILDRSMKVTLIYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVKSESNLFIASKSSQVIWSTGKVEEAKWRFHSVRDVFENGASFAQIGAGRGVSVKPNYNVQQRFRVADAKWLRALTSSSGALRCSPNSKC 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 69842734 69844704 - Hsped.07g25380.1 Hepe07g2538 575933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2538 380 Gene3D - 30 373 IPR012334 -
Hepe07g2538 380 PANTHER PECTATE LYASE 18-RELATED 27 376 IPR045032 GO:0030570(InterPro)
Hepe07g2538 380 SUPERFAMILY Pectin lyase-like 30 370 IPR011050 -
Hepe07g2538 380 SMART amb_all 107 304 IPR002022 -
Hepe07g2538 380 PRINTS Pollen allergen Amb family signature 115 131 IPR018082 -
Hepe07g2538 380 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Hepe07g2538 380 PRINTS Pollen allergen Amb family signature 78 103 IPR018082 -
Hepe07g2538 380 PRINTS Pollen allergen Amb family signature 259 278 IPR018082 -
Hepe07g2538 380 PRINTS Pollen allergen Amb family signature 351 374 IPR018082 -
Hepe07g2538 380 PRINTS Pollen allergen Amb family signature 179 200 IPR018082 -
Hepe07g2538 380 Pfam Pectate lyase 116 298 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0890 Hepe-Chr4:63187948 Hepe07g2538 Hepe-Chr7:69842734 7.44e-34 dispersed
Hepe07g2538 Hepe-Chr7:69842734 Hepe08g1574 Hepe-Chr8:22341687 9.22e-75 dispersed
Hepe07g2538 Hepe-Chr7:69842734 Hepe05g1732 Hepe-Chr5:67554278 3.54e-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2538 K01728 - csv:101217103 644.425