Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2548 ATGGCTCAGACGGCCAGTCGATCCAAAGTGCGGTGGGGAGAGCTTGATGACGACGACGGCGATCTCGATTTTCTCCTACCGCCCAAGAAAATTATCGGCCCCGACGAGAACGGCTTGAAGAAGATTATTGAATATCAGTTTAACGAAGATGGTAATAAGGTTAAGATCACAACCACCACGCGTACTCGCAAGCTTGCCCATGCTCGCCTCAGTAAACACGCCGTTGAGCGCCGATCTTGGCCCAAGTTCGGCGACGCTGTGCACGAAGACGTCGGCAGTCGCCTCACTATGGTCTCCACTGAGGAGATCCTCCTCGAACGCCCTCGTGCTCCTGGTAGCAAACCAGAAGAGCCAAAGGTTGCTGGAGACCCTCTAGCTCAACTTGGAAAAGGTGGTGCTGTTCTTATGGTCTGTAGGACTTGTGGCAAAAAGGGTGACCACTGGACCTCAAGGTGCCCTTACAAAGATTTGGCAGCACAAGGTGAGGGATTGGATAAGACTGCCGCACCAGAGGCTACAGCTGCTGCCCCTGGTGGTGCAACGAAGGGAGCATATGTTCCTCCAGGTATGAGAGCAGGAGCAGACAGGACTGGAACTGATATGAGACGAAGGAACGACGAAAACTCTGTTCGTGTCACCAACCTTTCAGAGGACACAAGAGAGCCTGACCTGCTCGAGCTTTTCCGACCTTTCGGTGCTGTTAGCCGAGTTTACGTTGCAGTTGATCAAAAGACTGGTATGAGCAGAGGATTTGGTTTCGTAAACTTTGTGAACCGTGAGGATGCTCAAAGAGCAATCAACAAACTGAATGGATATGGTTATGATAATCTCATCCTTAGAGTTGAGTGGGCCACTCCAAGGGCTACTTGA 870 51.38 MAQTASRSKVRWGELDDDDGDLDFLLPPKKIIGPDENGLKKIIEYQFNEDGNKVKITTTTRTRKLAHARLSKHAVERRSWPKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAAQGEGLDKTAAPEATAAAPGGATKGAYVPPGMRAGADRTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAT 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 69918431 69919945 + Hsped.07g25480.1 Hepe07g2548 575943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2548 289 Pfam RNA recognition motif 210 276 IPR000504 GO:0003723(InterPro)
Hepe07g2548 289 SUPERFAMILY RNA-binding domain, RBD 206 287 IPR035979 GO:0003676(InterPro)
Hepe07g2548 289 CDD eIF3G 37 156 IPR024675 -
Hepe07g2548 289 PIRSF Transl_init_eIF-3_RNA-bind 1 289 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Hepe07g2548 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 23 284 - -
Hepe07g2548 289 SMART rrm1_1 209 282 IPR000504 GO:0003723(InterPro)
Hepe07g2548 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723(InterPro)
Hepe07g2548 289 FunFam Eukaryotic translation initiation factor 3 subunit G 173 289 - -
Hepe07g2548 289 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 288 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Hepe07g2548 289 Gene3D - 175 289 IPR012677 -
Hepe07g2548 289 MobiDBLite consensus disorder prediction 171 207 - -
Hepe07g2548 289 Pfam Eukaryotic translation initiation factor 3 subunit G 32 157 IPR024675 -
Hepe07g2548 289 CDD RRM_eIF3G_like 209 284 IPR034240 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0745 Hepe-Chr2:8201389 Hepe07g2548 Hepe-Chr7:69918431 2.76e-09 dispersed
Hepe02g0971 Hepe-Chr2:11780415 Hepe07g2548 Hepe-Chr7:69918431 3.59e-191 dispersed
Hepe07g2548 Hepe-Chr7:69918431 Hepe08g2708 Hepe-Chr8:69062797 7.94e-11 dispersed
Hepe07g2548 Hepe-Chr7:69918431 Hepe03g1410 Hepe-Chr3:70793636 1.36e-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2548 K03248 - csv:101212619 543.502