Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2556 ATGGACTTCGGCGGTGGCTCCGGTTGGGATAATGATTCCTCCTCCGACCCTCAACGCCGGAAAAAACGCTACCACCGTCACACTGCCAACCAGATTCAGCGGCTCGAGGCAATGTTCAAAGAATGCCCACACCCAGATGAAAAGCAGAGGTTACAGTTAAGCAGAGAGCTGGGATTGGCTCCTCGCCAAATCAAATTTTGGTTCCAAAACAGAAGGACCCAGATGAAGGCTCAACATGAAAGAGCAGATAATAGTGCACTTCGGGCAGAGAACGACAAGATTCGATGTGAAAACATAGCCATTAGAGAAGCACTCAAAAATGTCATCTGCCCTTCCTGCGGTGGCCCTCCCCTTCAGGATCCCTATTACGACGAGCAAAAACTACGAATCGAAAACAACCATTTGAAAGAAGAGCTTGATAGAGTATCTAGCGTTGCGGCTAAGTACATCGGGAGGCCAATCTCTCAACTTCAACCCATTCAACCTTCTCATTTCTCCTCATTAGAGTTATCCATGGGGAATTTTGCCTCTCAAGAAATGCCTTCCCCTTCTCTTGATCTTGATTTACTTCCTGCAAGTTCTTCCAATGTTCCTACTTTGCCATACCATCTCCCAATTCACCTCTCCAACTTGGATAAGTCCCTCATGACTGAAATTGCCACAAATGCCATGGGCGAGCTGCTCAGGCTTTCCCAAACTAACGAACCATTCTGGATGAAATCACCGAGCGATGGACGCGATGTTCTTGATCTCCAAACCTATGAACAGGCTTTTCCAAGACCCAACGCTCACTTGAAGAATCTCCATTTTCGCACCGAAACATCTAGAGATTCGGGCGTGGTGATCAGGAATAGTTCAGCGTTGGTTGACATGTTTATGGACTCGGATAAATGGAGAGAGTTATTTCCCACAATTGTGTCAATTGCAAGAACGATTGAAGTTATATCATCCGGAATGATGGGAAGTCACAACGGTTCCTTGCAACTGATGTACCTAGAATTGCAGCTACTCTCCCCATTGGTTCCAACTCGCCATTTTTACGTCCTTCGATATTGTCAACAAATTGAGCAGGGCATGTGGGCTATAGTTGATGTTTCCTATGATATCCCCACAGAAAACCAAATAGTTTCTCATTCTCAATGTCACCGCTTTCCCTCGGGCTGCTTGATCCAGGACATGCCTAATGGTTATTCCAAGGTCACTTGGATTGAGCATGTGGAAGTGGAAGATAAAGGCTCGACTCATTGGCTTTTTAGAGATCTTATTCATAGTGGATTGGCCTTTGGTGCTGAACGGTGGCTTGCAACTCTTCAGCGGATGTCTGAAAGGTTTGCCTGTTTAATGGTTACTGGTAGTTCCAGTCAGGATCTCGGCGGAGTAATTCCATCACCAGAGGGAAAAAGAAGCATGATGAAACTAGCACAGCGGATGGTGAACAATTTCTGTGCTAGTATCAGCACATCTCATGGGCAGCGGTGGACCACTCTTTCTGGGATGAATGAGGTCGGTGTTCGTGTCACGGTGCATAAAAGCATGGATCCAGGCCAGCCTAATGGCGTGGTTCTTAGTGCAGCTACAACCATATGGCTCCCAGTTGCTCCTCAGACCATCTTTAACTTCTTTAAGAATGACCGAACCAGATCTCAGTGGGATGTTCTATCGGATGGCAATCCGGTTCAAGAAGTTGCTCATATAACCAACGGATCCCATCCAGGGAACTGCATATCTGTTCTCAGAGCTTTGAATACGAGTCAAAACAACATGTTGATTCTCCAAGAGAGTTGCATAGACTCATCTGGGTCAGTTGTTGTGTACTGCCCTGTAGATCTACCAGCGATGAATGTTGCAATGAGTGGGGAGGACCCATCAAGTATTCCTTTACTGCCCTCAGGATTCACGATTTTACCAGACGGCCGACGGGACCAAGGAGAGGGAGCATCGAGCAGCTCGGACGTGCACAGCAGGTCGGGGGGCTCGCTGGTGACGGTGGCGTTTCAGATACTAGTGAGCAGCTTGCCATCAGGGAAGCTGAATTTGGAGTCAGTGACAACTGTTAATAACCTTATCAGCACCACTGTCCACCAAATCAAGACAGCCTTAAATTGTCATAGCTCTTGA 2118 47.07 MDFGGGSGWDNDSSSDPQRRKKRYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGGPPLQDPYYDEQKLRIENNHLKEELDRVSSVAAKYIGRPISQLQPIQPSHFSSLELSMGNFASQEMPSPSLDLDLLPASSSNVPTLPYHLPIHLSNLDKSLMTEIATNAMGELLRLSQTNEPFWMKSPSDGRDVLDLQTYEQAFPRPNAHLKNLHFRTETSRDSGVVIRNSSALVDMFMDSDKWRELFPTIVSIARTIEVISSGMMGSHNGSLQLMYLELQLLSPLVPTRHFYVLRYCQQIEQGMWAIVDVSYDIPTENQIVSHSQCHRFPSGCLIQDMPNGYSKVTWIEHVEVEDKGSTHWLFRDLIHSGLAFGAERWLATLQRMSERFACLMVTGSSSQDLGGVIPSPEGKRSMMKLAQRMVNNFCASISTSHGQRWTTLSGMNEVGVRVTVHKSMDPGQPNGVVLSAATTIWLPVAPQTIFNFFKNDRTRSQWDVLSDGNPVQEVAHITNGSHPGNCISVLRALNTSQNNMLILQESCIDSSGSVVVYCPVDLPAMNVAMSGEDPSSIPLLPSGFTILPDGRRDQGEGASSSSDVHSRSGGSLVTVAFQILVSSLPSGKLNLESVTTVNNLISTTVHQIKTALNCHSS 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 70005103 70008063 + Hsped.07g25560.1 Hepe07g2556 575951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2556 705 CDD homeodomain 20 79 IPR001356 GO:0003677(InterPro)
Hepe07g2556 705 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 10 702 IPR042160 -
Hepe07g2556 705 SMART HOX_1 19 82 IPR001356 GO:0003677(InterPro)
Hepe07g2556 705 Gene3D - 9 94 - -
Hepe07g2556 705 MobiDBLite consensus disorder prediction 636 656 - -
Hepe07g2556 705 FunFam Homeobox-leucine zipper protein GLABRA 2 218 442 - -
Hepe07g2556 705 Pfam Homeodomain 21 76 IPR001356 GO:0003677(InterPro)
Hepe07g2556 705 ProSitePatterns 'Homeobox' domain signature. 53 76 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe07g2556 705 CDD START_ArGLABRA2_like 213 442 - -
Hepe07g2556 705 Pfam START domain 219 442 IPR002913 GO:0008289(InterPro)
Hepe07g2556 705 SUPERFAMILY Bet v1-like 212 444 - -
Hepe07g2556 705 SUPERFAMILY Bet v1-like 464 697 - -
Hepe07g2556 705 SMART START_1 218 443 IPR002913 GO:0008289(InterPro)
Hepe07g2556 705 MobiDBLite consensus disorder prediction 1 27 - -
Hepe07g2556 705 ProSiteProfiles START domain profile. 209 446 IPR002913 GO:0008289(InterPro)
Hepe07g2556 705 Gene3D - 218 443 IPR023393 -
Hepe07g2556 705 ProSiteProfiles 'Homeobox' domain profile. 18 78 IPR001356 GO:0003677(InterPro)
Hepe07g2556 705 FunFam Homeobox-leucine zipper protein HDG1 8 94 - -
Hepe07g2556 705 SUPERFAMILY Homeodomain-like 7 78 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1055 Hepe-Chr2:13006470 Hepe07g2556 Hepe-Chr7:70005103 5.17e-202 dispersed
Hepe06g1797 Hepe-Chr6:69021519 Hepe07g2556 Hepe-Chr7:70005103 5.81e-226 dispersed
Hepe07g2012 Hepe-Chr7:64331400 Hepe07g2556 Hepe-Chr7:70005103 1.15e-201 dispersed
Hepe07g2556 Hepe-Chr7:70005103 Hepe08g0472 Hepe-Chr8:4138873 1.32e-214 dispersed
Hepe07g2556 Hepe-Chr7:70005103 Hepe03g0511 Hepe-Chr3:8847067 6.18e-217 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56068 PF01852 START 2.50E-45 CL0209 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2556 K09338 - csv:101215660 1295.41