Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2558 ATGCAGTTTAGTTATGTTGAATTTATATATCACATCCTCCTCTGTTTCTTCTCTGCATCAAATTCAAATATGGTTTTGGCGACAGTTTCAGACTCGGGAGACTCTGTGAACTGCACTTTTGGTTCAAGATATCTGCGCTCTTCTCCCCCCAAGTTCAAACTGGGGGAGAATTCCATTCCCAAGGACGCAGCGTACCAGATCATACACGATGAGTTGATGCTGGACGGAACGCCGAGGCTGAACTTGGCTTCATTTGTTACCACGTGGATGGAGCCTGAGTGCGATAATCTTATCATGGCTTCTCTCAACAAGAACTATGTCGATATGGATGAGTACCCTGTCACCACTGACCTACAAAATCGATGTGTGAATATAATAGCTCGGCTGTTTCATGCCCCGATCGGAGAAGAAGAAGCTGCAGTTGGTGTGGGGACTGTGGGATCGTCGGAGGCGATCATGTTGGCGGGCCTTGCGTTTAAGAGGAAATGGCAGCATAAAAGAAAATCTCAAGGCAAACCCTTTGATAACCCCAACATAGTCACTGGTGCTAATGTTCAGGTGTGCTGGGAGAAGTTTGCAAGGTACTTTGAGGTTGAGCTAAAGGAGGTGAAGCTTTCTGAAGGATTTTATGTGATGGACCCTGTGAAGGCTGTTGAGCTTGTGGATGAGAATACTATTTGTGTTGCAGCGATTTTGGGGTCCACCCTGACAGGAGAGTTTGAGGATGTAAAACTCCTTAACGAGCTCCTCTCTAAGAAGAATGAGGAAACAGGTTGGGACACTCCAATTCATGTTGATGCAGCCAGTGGAGGGTTCATAGCCCCGTTCCTTAATCCCGATCTCGACTGGGATTTTCGGTTGCCTTTAGTGAAGAGTATCAATGTCAGTGGCCACAAGTATGGGCTTGTCTACCCTGGTGTGGGATGGGTTGTTTGGAGGAGTAAAGAGGATCTGCCTGATGAGCTCGTGTTCCACATTAACTATCTTGGTTCTGATCAACCCACCTTCACTCTTAACTTCTCGAAAGGTTCTAGTCAAATCATTGCTCAGTATTATCAATTTATACGACTTGGCTTCGAGGTAAATACAAAGTTCGAACAAACATTCCTTTTAAGAAATTTATGCACGATCTGCTAG 1137 45.38 MQFSYVEFIYHILLCFFSASNSNMVLATVSDSGDSVNCTFGSRYLRSSPPKFKLGENSIPKDAAYQIIHDELMLDGTPRLNLASFVTTWMEPECDNLIMASLNKNYVDMDEYPVTTDLQNRCVNIIARLFHAPIGEEEAAVGVGTVGSSEAIMLAGLAFKRKWQHKRKSQGKPFDNPNIVTGANVQVCWEKFARYFEVELKEVKLSEGFYVMDPVKAVELVDENTICVAAILGSTLTGEFEDVKLLNELLSKKNEETGWDTPIHVDAASGGFIAPFLNPDLDWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKEDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEVNTKFEQTFLLRNLCTIC 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 70019638 70021538 + Hsped.07g25580.1 Hepe07g2558 575953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2558 378 Gene3D - 24 87 - -
Hepe07g2558 378 FunFam Glutamate decarboxylase 88 371 - -
Hepe07g2558 378 PANTHER GLUTAMATE DECARBOXYLASE 26 363 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Hepe07g2558 378 SUPERFAMILY PLP-dependent transferases 38 360 IPR015424 -
Hepe07g2558 378 Gene3D - 88 372 IPR015421 -
Hepe07g2558 378 Pfam Pyridoxal-dependent decarboxylase conserved domain 59 360 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Hepe07g2558 378 FunFam Glutamate decarboxylase 27 87 - -
Hepe07g2558 378 NCBIfam glutamate decarboxylase 39 368 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2578 Hepe-Chr2:72755891 Hepe07g2558 Hepe-Chr7:70019638 5.55e-212 dispersed
Hepe02g2579 Hepe-Chr2:72776323 Hepe07g2558 Hepe-Chr7:70019638 2.60e-208 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2558 K01580 - csv:101210903 654.44