Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2566 ATGATAGGCAATACGAAGCTTACTCCGGCTTCCGAAGCTTACTCCTGCTTAGAGAATAATAATGGAAACAACAAGAGGAAAAGAAGACCCGCGGGAACCCCAGATCCGGATGCAGAAGTTGTGTCTCTGTCACCAAAAACACTACTGGAATCGGACCGGTACGTGTGCGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTACAGATGCACAGGCGCCGTCATAAGGTCCCTTGGAAGCTCTTAAAGAGGGAGAATCCTATTGTGAGGAAGAGGGTTTTCGTATGTCCTGAGCCCACTTGCCTTCATCACCACCCTTCCCATGCCCTCGGCGACCTCGTCGGTATCAAGAAGCACTTCCGTAGGAAGCACAGCAACCACAAGCAGTGGGTTTGTGATAAGTGCTCCAAAGCCTACGCCGTTCAGTCTGATTACAAGGCTCATCTCAAAACCTGCGGCACCCGTGGTCACTCTTGCGATTGCGGCCGTGTTTTCTCTAGGGTGGAGAGCTTTATAGAACACCAAGATGCTTGTAATAACATGGGGAATCTCCGGCAAGAATCTCAAGCCTTACAACCTGCTTGTCTGTCCCGAACTGCGTCGAGTCGAAGCCCGTCCAGCGACACCAACTTCAGCAGCGCTCCCAATTGGGCTGCTCTTAGAGCTCCACAACCTACTTTAAACCCTGCATTATTCTTAATCCCTACGGATGACTCCAATAATAATGCTGCTTCACCATTGTTATATGATGATCACAATTTAGACCTCAAACTCTCAACTGCATCAAATGGCGTTTCCGCCAAGAGATCAGAAGGGGGCCGTAATGACGATAAAGGTTCTTCAACGAAACTCATCCAGCTTTCGATCGGGTCGTCGTGTGATTTTGGGGAGAAGAGATCAAATCACAAGAATGAGGAGAAGGCGGGGTATGATGATGATGATGATGTTAGAGAAGAAGCGCGGGAGAGAGTAAGGGTGGCGATGGCGGAGAAGGCGTACGCGGAGGAAGCGAGGGAACAAGCAAGACGACAGATAGAAATGGCAGAGCAAGAATTCGGGAATGCGAAGAGGATGAGGCAACAAGCGCAAGCGGAGTTAGATAAGGCTACAGCTCTTAAACAAGCAGCAATCAAACGGATAAACTCAACCATGCTTGAAATCACTTGTCAAGCTTGCCAGAAGCAATTCCGTCAACCGAGTACAACAACAACTTCTTCTTCTTCACCCGCCGATCATCACGACAATACCGTCGCATTCAGTTACGTGTCCTCCGTCATTACAACGGAAGGTGAAGTAGACAAACATCAATCAACACTTATAATACCTAAACCGCCCAACAATGATTAA 1350 48.74 MIGNTKLTPASEAYSCLENNNGNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRENPIVRKRVFVCPEPTCLHHHPSHALGDLVGIKKHFRRKHSNHKQWVCDKCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNNMGNLRQESQALQPACLSRTASSRSPSSDTNFSSAPNWAALRAPQPTLNPALFLIPTDDSNNNAASPLLYDDHNLDLKLSTASNGVSAKRSEGGRNDDKGSSTKLIQLSIGSSCDFGEKRSNHKNEEKAGYDDDDDVREEARERVRVAMAEKAYAEEAREQARRQIEMAEQEFGNAKRMRQQAQAELDKATALKQAAIKRINSTMLEITCQACQKQFRQPSTTTTSSSSPADHHDNTVAFSYVSSVITTEGEVDKHQSTLIIPKPPNND 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 70116971 70119172 + Hsped.07g25660.1 Hepe07g2566 575961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2566 449 MobiDBLite consensus disorder prediction 297 316 - -
Hepe07g2566 449 FunFam protein indeterminate-domain 12-like 33 101 - -
Hepe07g2566 449 Gene3D Classic Zinc Finger 32 94 - -
Hepe07g2566 449 MobiDBLite consensus disorder prediction 264 283 - -
Hepe07g2566 449 Pfam Zinc finger, C2H2 type 54 76 IPR013087 -
Hepe07g2566 449 SUPERFAMILY beta-beta-alpha zinc fingers 53 151 IPR036236 -
Hepe07g2566 449 SMART c2h2final6 54 76 IPR013087 -
Hepe07g2566 449 SMART c2h2final6 131 158 IPR013087 -
Hepe07g2566 449 SMART c2h2final6 95 125 IPR013087 -
Hepe07g2566 449 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Hepe07g2566 449 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Hepe07g2566 449 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 91 125 - -
Hepe07g2566 449 Coils Coil 318 380 - -
Hepe07g2566 449 Gene3D Classic Zinc Finger 116 194 - -
Hepe07g2566 449 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 390 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe07g2566 449 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 130 154 - -
Hepe07g2566 449 MobiDBLite consensus disorder prediction 296 316 - -
Hepe07g2566 449 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 158 184 - -
Hepe07g2566 449 MobiDBLite consensus disorder prediction 13 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2586 Hepe-Chr2:72942126 Hepe07g2566 Hepe-Chr7:70116971 3.19e-113 dispersed
Hepe07g2331 Hepe-Chr7:67662460 Hepe07g2566 Hepe-Chr7:70116971 2.83e-124 dispersed
Hepe07g2566 Hepe-Chr7:70116971 Hepe08g0425 Hepe-Chr8:3743018 1.29e-70 dispersed
Hepe07g2566 Hepe-Chr7:70116971 Hepe01g1888 Hepe-Chr1:83724621 5.90e-71 transposed
Hepe07g2566 Hepe-Chr7:70116971 Hepe10g0659 Hepe-Chr10:8737679 3.65e-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56070 PF00096 zf-C2H2 0.0042 CL0361 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2566 K25871 - csv:101209426 599.356