Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0038 ATGAGAAGATCAAGTGTAAATCAACCAAAAGTCAAGCGTCTTGTGGGAAAATATGAAATTGGTCGAACAATTGGCGAGGGTACATTTGCAAAAGTGAAGTTTGCCAAAAATTCTGAGACTCAGGACCATGTAGCAATAAAGATCCTTGACAAAGAAAAAGTTCTGAAGCATAAGATGGCTGAACAGATCAAGCGGGAAGTAGCTACAATGAAACTAATAAAGCATCCACACGTCGTTCAATTGTTTGAGGTGATGGGGAGCAAAACAAAGATATTTATTGTTTTGGAGTTTGTTACTGGAGGAGAGCTTTTTGATAAAATTGTAAATCATGGACGGATGAGTGAAAATGAGGCACGGAGATATTTCCAACAACTTATAAATGCTGTTGATTATTGTCATAGCAGGGGTGTTTATCACAGGGATCTTAAGCCAGAAAATCTCTTGTTGGATGCCTACGGAAATCTTAAAGTTTCTGATTTTGGATTGAGTGCATTGTCACAACAAGTTAAAGATGATGGCCTGCTTCACACTACTTGTGGAACTCCAAACTATGTTGCTCCTGAGGTCCTTAATGATAGAGGCTACGATGGTGCAACTGCAGACTTATGGTCTTGTGGAGTCATACTCTTCGTACTGCTTGCAGGTTACTTGCCTTTTGATGATTCTAATCTCATGAACCTTTATAAAAAGATCTCGGCTGCCGAATTTACTTGTCCTCCATGGCTTTCTTTAGATGCCATGAAATTGATAACTCGAATTTTGGATCCCAACCCAATGACTCGCATCACTGTACCTGAAATGTTGGAAGATGAATGGTTTAAGAAAGATTATAAGCCCCCTATTTTTGAGGAGAATAAGATTGCAAACCTGGATGATGTAGAAGCCGTCTTTAAAGATTCAGAAGAGCACCACGTGACGGAGAAGAAGGAAGAACAGCCAGTAGCCATGAATGCCTTCGAGTTAATTTCAATGTCGAAAGGGCTCAACCTGGCAAATTTGTTTGGTACAGAACAGGAATTCAAGAGAGAAACAAGGTTCACCTCTAAATGCTCAGCTAATGAAATTGTAAATAAGATTGAAGAAGCTGCCAAACCTCTTGGTTTTGATGTACAAAAGAAAAATTACAAGATGAGGCTTGAAAATGTGAAAGCCGGTCGAAAGGGAAACCTTAATGTTGCCACAGAGATTTTGCAAGTGGCACCTTGTGTTCATGTGGTTGAGATGCGAAAAGCAAAGGGAGACACTTTAGAGTTTCACAAGTTCTACAAAAAACTCTCCACCTCCCTGGAGGATGTTGTTTGGAAGACTGAGGAAGACCTGCAAGAAACAAAGTGA 1335 39.93 MRRSSVNQPKVKRLVGKYEIGRTIGEGTFAKVKFAKNSETQDHVAIKILDKEKVLKHKMAEQIKREVATMKLIKHPHVVQLFEVMGSKTKIFIVLEFVTGGELFDKIVNHGRMSENEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLLAGYLPFDDSNLMNLYKKISAAEFTCPPWLSLDAMKLITRILDPNPMTRITVPEMLEDEWFKKDYKPPIFEENKIANLDDVEAVFKDSEEHHVTEKKEEQPVAMNAFELISMSKGLNLANLFGTEQEFKRETRFTSKCSANEIVNKIEEAAKPLGFDVQKKNYKMRLENVKAGRKGNLNVATEILQVAPCVHVVEMRKAKGDTLEFHKFYKKLSTSLEDVVWKTEEDLQETK 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 288362 293501 - Hsped.08g00380.1 Hepe08g0038 576010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0038 444 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 423 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Hepe08g0038 444 CDD STKc_SnRK3 17 272 - -
Hepe08g0038 444 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Hepe08g0038 444 ProSiteProfiles Protein kinase domain profile. 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g0038 444 Gene3D Kinase associated domain 1, KA1 310 435 - -
Hepe08g0038 444 FunFam Non-specific serine/threonine protein kinase 11 313 - -
Hepe08g0038 444 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Hepe08g0038 444 Pfam Protein kinase domain 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g0038 444 SMART serkin_6 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g0038 444 Pfam NAF domain 313 372 IPR004041 GO:0007165(InterPro)
Hepe08g0038 444 CDD CIPK_C 317 431 - -
Hepe08g0038 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe08g0038 444 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165(InterPro)
Hepe08g0038 444 Gene3D Phosphorylase Kinase; domain 1 7 97 - -
Hepe08g0038 444 Gene3D Transferase(Phosphotransferase) domain 1 98 280 - -
Hepe08g0038 444 FunFam Non-specific serine/threonine protein kinase 310 435 - -
Hepe08g0038 444 SUPERFAMILY Protein kinase-like (PK-like) 14 299 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2055 Hepe-Chr2:49273026 Hepe08g0038 Hepe-Chr8:288362 1.76e-78 dispersed
Hepe04g2016 Hepe-Chr4:74943686 Hepe08g0038 Hepe-Chr8:288362 1.28e-195 dispersed
Hepe05g2063 Hepe-Chr5:71115157 Hepe08g0038 Hepe-Chr8:288362 6.23e-166 dispersed
Hepe07g1747 Hepe-Chr7:59864705 Hepe08g0038 Hepe-Chr8:288362 5.30e-220 dispersed
Hepe08g0038 Hepe-Chr8:288362 Hepe09g0673 Hepe-Chr9:6368696 6.30e-180 dispersed
Hepe05g0467 Hepe-Chr5:6151552 Hepe08g0038 Hepe-Chr8:288362 1.72e-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73008 PF00069 Pkinase 5.40E-72 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0038 - - - 0.0