Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0073 ATGAGTACCGTAGAATTCAGAGAGAAGGGGATGTATCAGCAGCAGAAGTCAAGGGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACCGAGTTGCGCCTTACATCTATAGATTCTCAAGCAGCAACTTCTCGTCCAGAGTTCAAAGGTGTCTCTTTCAGGAAAGCTTCCACTGGTGGTTTTACCAGGAATCGCAATGATGTACACGAGCTACTCGATTGTACTGTTTGCATGAATTTGATGCATCCTCCAATTTACCAGTGTGCCAATGGTCACACTCTTTGTTCAAGCTGCAAGGCAAGGGTTCAGAACTGCTGCCCTACCTGCCGCCACGAGCTTGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCCGAGTCGCTCGAGCTCCCTTGTGTGTACGAAAACCTTGGTTGCATTGACATGTTCCCATACTACAGCAAGCTTAAACATGAGAAGAGCTGTAAATACCGCCCGTACAACTGTCCTTATGCTGGAGGTGAATGTTCTGTAACCGGTGACATTCCATACCTTGTCACGCATCTCAAGGACGAGCACGAGGTCGATATGCATGATGGATGTTCCTTCAGCCATAGATATGTCAAATCCAATCCCCATGAAGTTGAAAATGCTACATGGATGCTTACTGTTTTTAACTGTTTTGGACGACAATTCTGTTTGCACTTTGAAGCATTTCGATTAGGAACAGCACCTGTTTACATGGCATTCCTCCGGTTTATGGGCGACGATGACGAGGCAAAACAATTTTCTTACAGTCTGGAAATTGGTGGAAATGGCAGAAAACTCATATGGCAAGGTATACCGAGAAGTATCCGCGATAGCCATCGGAAGGTTCGGGACAGTCACGACGGATTAATCATTCAGAGGAACTTGGCACTATTCTGCTCTGGAAATGAGGGGCAGGAACTCAAGTTAAAGGTTGCAGGGCGAATATGGAGAGTGAGGTGA 978 46.52 MSTVEFREKGMYQQQKSREEHASSAASFCKEVTELRLTSIDSQAATSRPEFKGVSFRKASTGGFTRNRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCVYENLGCIDMFPYYSKLKHEKSCKYRPYNCPYAGGECSVTGDIPYLVTHLKDEHEVDMHDGCSFSHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDEAKQFSYSLEIGGNGRKLIWQGIPRSIRDSHRKVRDSHDGLIIQRNLALFCSGNEGQELKLKVAGRIWRVR 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 569988 573025 - Hsped.08g00730.1 Hepe08g0073 576045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0073 325 ProSiteProfiles Zinc finger SIAH-type profile. 130 190 IPR013010 GO:0008270(InterPro)
Hepe08g0073 325 Pfam Sina, zinc finger 126 201 - -
Hepe08g0073 325 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 27 320 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Hepe08g0073 325 FunFam E3 ubiquitin-protein ligase SINAT5-like 186 318 - -
Hepe08g0073 325 SUPERFAMILY TRAF domain-like 130 321 - -
Hepe08g0073 325 Pfam Sina, TRAF-like domain 221 317 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Hepe08g0073 325 CDD RING-HC_SIAHs 75 113 - -
Hepe08g0073 325 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 184 318 IPR008974 GO:0005515(InterPro)
Hepe08g0073 325 ProSiteProfiles Zinc finger RING-type profile. 77 113 IPR001841 -
Hepe08g0073 325 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 77 112 IPR049548 -
Hepe08g0073 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 129 IPR013083 -
Hepe08g0073 325 FunFam E3 ubiquitin-protein ligase SINAT3 127 185 - -
Hepe08g0073 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 183 IPR013083 -
Hepe08g0073 325 SUPERFAMILY RING/U-box 60 117 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2379 Hepe-Chr2:68886767 Hepe08g0073 Hepe-Chr8:569988 8.16e-25 dispersed
Hepe04g0245 Hepe-Chr4:45415961 Hepe08g0073 Hepe-Chr8:569988 4.23e-170 dispersed
Hepe07g0062 Hepe-Chr7:572045 Hepe08g0073 Hepe-Chr8:569988 8.27e-153 dispersed
Hepe07g0063 Hepe-Chr7:575344 Hepe08g0073 Hepe-Chr8:569988 4.63e-143 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0073 K04506 - csv:101213438 651.744