Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe08g0073 | ATGAGTACCGTAGAATTCAGAGAGAAGGGGATGTATCAGCAGCAGAAGTCAAGGGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACCGAGTTGCGCCTTACATCTATAGATTCTCAAGCAGCAACTTCTCGTCCAGAGTTCAAAGGTGTCTCTTTCAGGAAAGCTTCCACTGGTGGTTTTACCAGGAATCGCAATGATGTACACGAGCTACTCGATTGTACTGTTTGCATGAATTTGATGCATCCTCCAATTTACCAGTGTGCCAATGGTCACACTCTTTGTTCAAGCTGCAAGGCAAGGGTTCAGAACTGCTGCCCTACCTGCCGCCACGAGCTTGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCCGAGTCGCTCGAGCTCCCTTGTGTGTACGAAAACCTTGGTTGCATTGACATGTTCCCATACTACAGCAAGCTTAAACATGAGAAGAGCTGTAAATACCGCCCGTACAACTGTCCTTATGCTGGAGGTGAATGTTCTGTAACCGGTGACATTCCATACCTTGTCACGCATCTCAAGGACGAGCACGAGGTCGATATGCATGATGGATGTTCCTTCAGCCATAGATATGTCAAATCCAATCCCCATGAAGTTGAAAATGCTACATGGATGCTTACTGTTTTTAACTGTTTTGGACGACAATTCTGTTTGCACTTTGAAGCATTTCGATTAGGAACAGCACCTGTTTACATGGCATTCCTCCGGTTTATGGGCGACGATGACGAGGCAAAACAATTTTCTTACAGTCTGGAAATTGGTGGAAATGGCAGAAAACTCATATGGCAAGGTATACCGAGAAGTATCCGCGATAGCCATCGGAAGGTTCGGGACAGTCACGACGGATTAATCATTCAGAGGAACTTGGCACTATTCTGCTCTGGAAATGAGGGGCAGGAACTCAAGTTAAAGGTTGCAGGGCGAATATGGAGAGTGAGGTGA | 978 | 46.52 | MSTVEFREKGMYQQQKSREEHASSAASFCKEVTELRLTSIDSQAATSRPEFKGVSFRKASTGGFTRNRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCVYENLGCIDMFPYYSKLKHEKSCKYRPYNCPYAGGECSVTGDIPYLVTHLKDEHEVDMHDGCSFSHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDEAKQFSYSLEIGGNGRKLIWQGIPRSIRDSHRKVRDSHDGLIIQRNLALFCSGNEGQELKLKVAGRIWRVR | 325 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 569988 | 573025 | - | Hsped.08g00730.1 | Hepe08g0073 | 576045 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe08g0073 | 325 | ProSiteProfiles | Zinc finger SIAH-type profile. | 130 | 190 | IPR013010 | GO:0008270(InterPro) | |
Hepe08g0073 | 325 | Pfam | Sina, zinc finger | 126 | 201 | - | - | |
Hepe08g0073 | 325 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 27 | 320 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Hepe08g0073 | 325 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 186 | 318 | - | - | |
Hepe08g0073 | 325 | SUPERFAMILY | TRAF domain-like | 130 | 321 | - | - | |
Hepe08g0073 | 325 | Pfam | Sina, TRAF-like domain | 221 | 317 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Hepe08g0073 | 325 | CDD | RING-HC_SIAHs | 75 | 113 | - | - | |
Hepe08g0073 | 325 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 184 | 318 | IPR008974 | GO:0005515(InterPro) | |
Hepe08g0073 | 325 | ProSiteProfiles | Zinc finger RING-type profile. | 77 | 113 | IPR001841 | - | |
Hepe08g0073 | 325 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 77 | 112 | IPR049548 | - | |
Hepe08g0073 | 325 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 7 | 129 | IPR013083 | - | |
Hepe08g0073 | 325 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 127 | 185 | - | - | |
Hepe08g0073 | 325 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 183 | IPR013083 | - | |
Hepe08g0073 | 325 | SUPERFAMILY | RING/U-box | 60 | 117 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g2379 | Hepe-Chr2:68886767 | Hepe08g0073 | Hepe-Chr8:569988 | 8.16e-25 | dispersed | |
Hepe04g0245 | Hepe-Chr4:45415961 | Hepe08g0073 | Hepe-Chr8:569988 | 4.23e-170 | dispersed | |
Hepe07g0062 | Hepe-Chr7:572045 | Hepe08g0073 | Hepe-Chr8:569988 | 8.27e-153 | dispersed | |
Hepe07g0063 | Hepe-Chr7:575344 | Hepe08g0073 | Hepe-Chr8:569988 | 4.63e-143 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe08g0073 | K04506 | - | csv:101213438 | 651.744 |