Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0110 ATGAATTCAAACAATTGGCTTTCATTTCCACTTTCACCCACTAATCCTTCCTTACCACCCCATCTCCAAACAACAACTCAATCCCATCATCATTTCTCTTTGGGTAATTTGGAGAATGATCATAATATGGATATCCCATTTCAAACCCACGAGTGGAATCTGATAAGTAATAGTCAAGGAGGTGGTGAAGTTCCAAAAGTGGCAGATTTTTTAGGCGTAAGCAAGGCAGAAAATGAAACAGATCTAATTGGGTTTAATAATGAAATTCATCATCAGAGTAATGATACAGACTACTTGTTTCCAATCACAAGATTGGTACCTGTTCAACAAACAACAGTTGCTGCTGCTAATATAAATCTCGACTCTACCAATACTAACTATGACCTTCAAGATAATTCAAACAGTTTGCAGTCTTTGACACTTTCAATGGCCACTACTGGTAATGGCAAGGCCTCTGCATGTGAAACCCCCCCTGACAATAACAATACCGCCATTACCACGGTTGACGTCACGCCTAGAAGAACTCTCGACACTTTTGGCCAAAGAACTTCTATTTATCGCGGTGTCACCAGGCATAGATGGACGGGTAGGTATGAAGCACATTTGTGGGATAATAGTTGCAGGAGGGAAGGGCAGTCGAGGAAGGGTCGGCAAGGTGGGTATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATCTTGCTGCATTGAAGTACTGGGGAACATCCACTACTACAAACTTTCCTATTAGTAACTACGAGAAGGAAGTGGAGGAAATGAAGCACATGACGAGACAAGAATTTGTTGCTTCCATTAGAAGGAAAAGTAGTGGATTTTCAAGGGGGGCATCCATGTACCGTGGTGTTACAAGGTTTGATTCATATGTGAGTCTTATATTTGTTATAGGCACGGAGGAGGAAGCAGCAGAAGCATACGACATAGCGGCGATAAAATTCCGAGGGCTAAACGCAGTGACAAATTTCGACATGAGCCGTTACGATGTGAAAAGCATATTAGAGAGCAACACGCTCCCGATCGGCGGTGGTGCTGCAAAGCGGCTGAAAGAAGCCCAAGCCATTGAGTCGTCTCGAAAGCGCGAGGAAATGATTGCCCTAGGTTCCTCCTCCTCCTCCTCCTCCTTCCAATATGGCAACTCCTCCTCCTCCTCTACTAATTCCAACAGGCTAATTCCCAATTTCCCTCCCTTACTCGACCACCACCTCCAAACCCAGCCTCTGCTCTCTCTTCAAAACCACCCTGACATTTCTCACTATACCCACGACCCCCCCTCGTTTCATCACTCTAACTACATGCACACCCACCTCCAACTTCACCAATCTGATTCCCCTTATGCCAACAACCATCAATTCTACGGTGCCGGTGCCGGTGTCGGTGGGTATCTTCACAACCATCCAGCTTTACTGCATGGGATGATCAACATGGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGCTCTAATTTGGAGAGTAACAACAACAACAATGCCACTAATTTTAACAATAGTAATAGTAATGGAGGGTATCTTGGAAATGCTTTTGGGGGGATGGGTTCTAGCAGCTCCGGCGCCCCGGCGGCGGAGGAATACGCCCTGGTTAAGGTTGATTATGACTCTGCTGCCTACGGGACCTGGTCCGGGGATTCGGTTCACCCCGCTTCTAACAATGGGGTTTTTTCAATGTGGAATGATATTAATTAA 1716 46.1 MNSNNWLSFPLSPTNPSLPPHLQTTTQSHHHFSLGNLENDHNMDIPFQTHEWNLISNSQGGGEVPKVADFLGVSKAENETDLIGFNNEIHHQSNDTDYLFPITRLVPVQQTTVAAANINLDSTNTNYDLQDNSNSLQSLTLSMATTGNGKASACETPPDNNNTAITTVDVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRFDSYVSLIFVIGTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAIESSRKREEMIALGSSSSSSSFQYGNSSSSSTNSNRLIPNFPPLLDHHLQTQPLLSLQNHPDISHYTHDPPSFHHSNYMHTHLQLHQSDSPYANNHQFYGAGAGVGGYLHNHPALLHGMINMGGGGGGGGGGGSNLESNNNNNATNFNNSNSNGGYLGNAFGGMGSSSSGAPAAEEYALVKVDYDSAAYGTWSGDSVHPASNNGVFSMWNDIN 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 926720 930028 - Hsped.08g01100.1 Hepe08g0110 576082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0110 571 Gene3D AP2/ERF domain 256 330 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0110 571 Gene3D AP2/ERF domain 185 250 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0110 571 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 137 389 - -
Hepe08g0110 571 MobiDBLite consensus disorder prediction 1 33 - -
Hepe08g0110 571 SUPERFAMILY DNA-binding domain 184 250 IPR016177 GO:0003677(InterPro)
Hepe08g0110 571 SMART rav1_2 185 254 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0110 571 SMART rav1_2 284 334 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0110 571 FunFam AP2-like ethylene-responsive transcription factor ANT 184 250 - -
Hepe08g0110 571 SUPERFAMILY DNA-binding domain 283 330 IPR016177 GO:0003677(InterPro)
Hepe08g0110 571 MobiDBLite consensus disorder prediction 364 395 - -
Hepe08g0110 571 MobiDBLite consensus disorder prediction 1 37 - -
Hepe08g0110 571 MobiDBLite consensus disorder prediction 368 395 - -
Hepe08g0110 571 CDD AP2 184 250 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0110 571 ProSiteProfiles AP2/ERF domain profile. 185 248 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0110 571 PRINTS Ethylene responsive element binding protein signature 310 330 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0110 571 PRINTS Ethylene responsive element binding protein signature 186 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0110 571 ProSiteProfiles AP2/ERF domain profile. 252 328 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0110 Hepe-Chr8:926720 Hepe09g0476 Hepe-Chr9:4398524 1.34e-85 dispersed
Hepe08g0110 Hepe-Chr8:926720 Hepe08g1835 Hepe-Chr8:45654109 1.52e-98 transposed
Hepe08g0110 Hepe-Chr8:926720 Hepe08g1924 Hepe-Chr8:51016520 1.52e-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56075 PF00847 AP2 2.70E-09 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0110 K09285 - csv:101207097 747.273