Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0113 ATGAGTGATCCCTACTCTTCCATCAATGGCTCTTTTGGTTTATACCAAACCTACTTCTCTTCTTCTTCAAATTCCTCAAATTCTTACTCTCCTAATTATGATCATCTCTTCTCTCTTTCTAATTACTCTAATGATAATATTAATAATACCCTAAAAAACTCTTTTTCTTCTTCCTCTCCTCAAGTCCTTCTTCCCCTTTTGAGTTTAAGCCCTGCAAGACATGATAATAATAATCATCATCACCCATTTTCACACAACTTGAATAACTTGTGTGATCAACAAGATGATGATGATGAGAGCACTCATGTTACTGTTGCTTTGCATTTAGGGCTTCCTTCTTCTTCTTCTTCTTCTTCTGATCTGATTTTGAGGCTTTCTTCAACTGAGATCTCAGATAAAGAAGATCATCAATTATTAGATCATCAAGAAGCTGCTGTTAATTATAATAATAATAATGTTGTTGTTGTTCCTAATACTAATTATTACTGTTCATCATCATCATCATCATCATCCTCCACTATTACTACAACTACTGCTGGTGGACTCAACATTAACAAAGGTCAGTATTGGATTCCCACTCCTTCTCAGATTCTCATTGGTCCAACTCAGTTTTCTTGCCCTCTTTGCTTCAAGACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCACAGTCACTAAGAGGAACACAACCAACAGCCATGCTTAGACTGCCATGTTATTGCTGTTCTCCAGGGTGTAGGAACAACATAGACCATCCAAGGTCAAAGCCACTAAAAGACTTCAGAACCCTACAAACACATTACAAAAGAAAGCATGGAATAAAGCCATTTACGTGTAGAAAATGTGGGAAAGCCTTTGCTGTGAGAGGGGACTGGAGAACCCATGAGAAGAACTGTGGGAAGCTTTGGCATTGCACTTGTGGCTCTGATTTTAAGCACAAGAGATCTCTCAAAGATCACATCAAGGCATTTGGACATGGCCATGCAGCTTATGGGATTCACTCTTTTGATGAAGATGATGACCCTGCTTCTGAAATTGAACATGATAATAATTATGACTTCTCTCCAACTAATAATGGAGATTGA 1119 38.16 MSDPYSSINGSFGLYQTYFSSSSNSSNSYSPNYDHLFSLSNYSNDNINNTLKNSFSSSSPQVLLPLLSLSPARHDNNNHHHPFSHNLNNLCDQQDDDDESTHVTVALHLGLPSSSSSSSDLILRLSSTEISDKEDHQLLDHQEAAVNYNNNNVVVVPNTNYYCSSSSSSSSSTITTTTAGGLNINKGQYWIPTPSQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCSPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIHSFDEDDDPASEIEHDNNYDFSPTNNGD 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 959454 962244 - Hsped.08g01130.1 Hepe08g0113 576085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0113 372 PANTHER ZINC FINGER PROTEIN WIP2 31 362 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Hepe08g0113 372 SMART c2h2final6 204 226 IPR013087 -
Hepe08g0113 372 SMART c2h2final6 314 337 IPR013087 -
Hepe08g0113 372 SMART c2h2final6 288 308 IPR013087 -
Hepe08g0113 372 Pfam Zinc finger, C2H2 type 204 223 IPR013087 -
Hepe08g0113 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 288 315 IPR013087 -
Hepe08g0113 372 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 287 311 - -
Hepe08g0113 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 231 IPR013087 -
Hepe08g0113 372 FunFam Zinc finger protein WIP2 257 339 - -
Hepe08g0113 372 MobiDBLite consensus disorder prediction 352 372 - -
Hepe08g0113 372 ProSitePatterns Zinc finger C2H2 type domain signature. 206 226 IPR013087 -
Hepe08g0113 372 Gene3D Classic Zinc Finger 250 342 - -
Hepe08g0113 372 Gene3D Classic Zinc Finger 203 226 - -
Hepe08g0113 372 SUPERFAMILY beta-beta-alpha zinc fingers 269 308 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0565 Hepe-Chr5:7947960 Hepe08g0113 Hepe-Chr8:959454 4.87e-118 dispersed
Hepe08g0113 Hepe-Chr8:959454 Hepe10g0981 Hepe-Chr10:36769382 1.84e-99 dispersed
Hepe02g2725 Hepe-Chr2:75570150 Hepe08g0113 Hepe-Chr8:959454 5.83e-107 transposed
Hepe03g1738 Hepe-Chr3:74252542 Hepe08g0113 Hepe-Chr8:959454 6.31e-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56076 None None None None Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0113 - - - 0.0