Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0129 GGCTTCCGATTTCCACAATTTGCTCTCCAAGTATGCAGTCAAAGTCTAAAAGTGTGAGTGAACTAGAATCTGAACCACCAAATATGCAGCAGCCTAGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACACTCTTATCTCCCCACCAGCAGCAGGAGGAAATGTGTCCAATTCAGCATCACTGGAATGCGCTAATGGTGCTTCAGAATCTAATGATGGTCAGTCAATGTCAAATGATGATTTGGATGAAGATGATGATGGTGAGATCACAAAAGATTCACAAGCTGCAAGTTATGGGCAAGGACAGCACAACAGTCAGCATGCTGTTTCTACTGCTCCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCCTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCTATGGGTTATCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCTCTTGAGGTAACACAGGAGCCTGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCAAGGGGTACTGGAGGACGTTTTGCCAAGAAAAATGAAGTTAAATCTTCAAGCTCTACTAGGAAGGACAAGAAATCCGGTTCTGGTCAAGCTATCTCGTCGCAGTCTGCTAGTTCATCTGGTTCTGAAGCTGTGCCTGGTGCCTTGGCTGAAACCTGGACTTCCTCCAATGGTCAACAAGAAGCTAGGACCCAGCTGAATGAGGCATATGAAGCTCGTTGTTATGTGAATGGCAGTAGCCATTTTCATAATTACAGTAGCTTCCAAGCTTCATCATATGCTTTACGCCCTGGTGATAGAGGTGAAGATGGAGACTGTTCGGTACAGCAACGAGGAAGTATCTCAGAAAATCAGGCAGCACAGAGGCGTCTTGCCATCAAGTGA 1067 45.55 LPISTICSPSMQSKSKSVSELESEPPNMQQPSSYSEPWWRSIGYTLISPPAAGGNVSNSASLECANGASESNDGQSMSNDDLDEDDDGEITKDSQAASYGQGQHNSQHAVSTAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPMGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEVKSSSSTRKDKKSGSGQAISSQSASSSGSEAVPGALAETWTSSNGQQEARTQLNEAYEARCYVNGSSHFHNYSSFQASSYALRPGDRGEDGDCSVQQRGSISENQAAQRRLAIK 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1100717 1105994 + Hsped.08g01290.1 Hepe08g0129 576101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0129 354 MobiDBLite consensus disorder prediction 216 232 - -
Hepe08g0129 354 ProSitePatterns NF-YA/HAP2 subunit signature. 183 203 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Hepe08g0129 354 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 29 292 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Hepe08g0129 354 MobiDBLite consensus disorder prediction 250 289 - -
Hepe08g0129 354 MobiDBLite consensus disorder prediction 233 249 - -
Hepe08g0129 354 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 180 235 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0129 354 ProSiteProfiles NF-YA/HAP2 family profile. 178 238 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0129 354 MobiDBLite consensus disorder prediction 50 111 - -
Hepe08g0129 354 MobiDBLite consensus disorder prediction 94 111 - -
Hepe08g0129 354 SMART cbf3 177 238 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0129 354 MobiDBLite consensus disorder prediction 51 76 - -
Hepe08g0129 354 PRINTS CCAAT-binding transcription factor subunit B signature 212 235 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0129 354 PRINTS CCAAT-binding transcription factor subunit B signature 181 203 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0129 354 Gene3D - 178 240 - -
Hepe08g0129 354 MobiDBLite consensus disorder prediction 321 354 - -
Hepe08g0129 354 MobiDBLite consensus disorder prediction 214 289 - -
Hepe08g0129 354 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0452 Hepe-Chr5:5925321 Hepe08g0129 Hepe-Chr8:1100717 1.41e-23 dispersed
Hepe08g0129 Hepe-Chr8:1100717 Hepe08g2684 Hepe-Chr8:68857174 6.09e-26 dispersed
Hepe04g2048 Hepe-Chr4:75341307 Hepe08g0129 Hepe-Chr8:1100717 1.38e-33 transposed
Hepe03g1747 Hepe-Chr3:74366405 Hepe08g0129 Hepe-Chr8:1100717 7.33e-52 wgd
Hepe08g0129 Hepe-Chr8:1100717 Hepe09g1122 Hepe-Chr9:12757075 9.49e-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56079 PF02045 CBFB_NFYA 2.50E-26 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0129 K08064 - csv:101212961 554.673