Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0129 GGCTTCCGATTTCCACAATTTGCTCTCCAAGTATGCAGTCAAAGTCTAAAAGTGTGAGTGAACTAGAATCTGAACCACCAAATATGCAGCAGCCTAGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACACTCTTATCTCCCCACCAGCAGCAGGAGGAAATGTGTCCAATTCAGCATCACTGGAATGCGCTAATGGTGCTTCAGAATCTAATGATGGTCAGTCAATGTCAAATGATGATTTGGATGAAGATGATGATGGTGAGATCACAAAAGATTCACAAGCTGCAAGTTATGGGCAAGGACAGCACAACAGTCAGCATGCTGTTTCTACTGCTCCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCCTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCTATGGGTTATCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCTCTTGAGGTAACACAGGAGCCTGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCAAGGGGTACTGGAGGACGTTTTGCCAAGAAAAATGAAGTTAAATCTTCAAGCTCTACTAGGAAGGACAAGAAATCCGGTTCTGGTCAAGCTATCTCGTCGCAGTCTGCTAGTTCATCTGGTTCTGAAGCTGTGCCTGGTGCCTTGGCTGAAACCTGGACTTCCTCCAATGGTCAACAAGAAGCTAGGACCCAGCTGAATGAGGCATATGAAGCTCGTTGTTATGTGAATGGCAGTAGCCATTTTCATAATTACAGTAGCTTCCAAGCTTCATCATATGCTTTACGCCCTGGTGATAGAGGTGAAGATGGAGACTGTTCGGTACAGCAACGAGGAAGTATCTCAGAAAATCAGGCAGCACAGAGGCGTCTTGCCATCAAGTGA 1067 45.55 LPISTICSPSMQSKSKSVSELESEPPNMQQPSSYSEPWWRSIGYTLISPPAAGGNVSNSASLECANGASESNDGQSMSNDDLDEDDDGEITKDSQAASYGQGQHNSQHAVSTAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPMGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNEVKSSSSTRKDKKSGSGQAISSQSASSSGSEAVPGALAETWTSSNGQQEARTQLNEAYEARCYVNGSSHFHNYSSFQASSYALRPGDRGEDGDCSVQQRGSISENQAAQRRLAIK 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1100717 1105994 + Hsped.08g01290.1 Hepe08g0129 576101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0129 354 MobiDBLite consensus disorder prediction 216 232 - -
Hepe08g0129 354 ProSitePatterns NF-YA/HAP2 subunit signature. 183 203 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Hepe08g0129 354 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 29 292 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Hepe08g0129 354 MobiDBLite consensus disorder prediction 250 289 - -
Hepe08g0129 354 MobiDBLite consensus disorder prediction 233 249 - -
Hepe08g0129 354 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 180 235 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0129 354 ProSiteProfiles NF-YA/HAP2 family profile. 178 238 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0129 354 MobiDBLite consensus disorder prediction 50 111 - -
Hepe08g0129 354 MobiDBLite consensus disorder prediction 94 111 - -
Hepe08g0129 354 SMART cbf3 177 238 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0129 354 MobiDBLite consensus disorder prediction 51 76 - -
Hepe08g0129 354 PRINTS CCAAT-binding transcription factor subunit B signature 212 235 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0129 354 PRINTS CCAAT-binding transcription factor subunit B signature 181 203 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0129 354 Gene3D - 178 240 - -
Hepe08g0129 354 MobiDBLite consensus disorder prediction 321 354 - -
Hepe08g0129 354 MobiDBLite consensus disorder prediction 214 289 - -
Hepe08g0129 354 MobiDBLite consensus disorder prediction 1 35 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0129 K08064 - - csv:101212961 554.673
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0452 Hepe-Chr5:5925321 Hepe08g0129 Hepe-Chr8:1100717 1.41e-23 dispersed
Hepe08g0129 Hepe-Chr8:1100717 Hepe08g2684 Hepe-Chr8:68857174 6.09e-26 dispersed
Hepe04g2048 Hepe-Chr4:75341307 Hepe08g0129 Hepe-Chr8:1100717 1.38e-33 transposed
Hepe03g1747 Hepe-Chr3:74366405 Hepe08g0129 Hepe-Chr8:1100717 7.33e-52 wgd
Hepe08g0129 Hepe-Chr8:1100717 Hepe09g1122 Hepe-Chr9:12757075 9.49e-96 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g0129 . 28 272 CCAAT-HAP2 Transcription Factor Family AT5G12840 52.6 1.5e-58 223.4
Hepe09g1122 . 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.5 1.1e-46 184.1
Hepe04g2048 . 1 194 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.6 1.4e-47 186.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56079 PF02045 CBFB_NFYA 2.50E-26 No_clan Hepe TF