Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0153 ATGTGGTCCGCCACCCAACGCTCCCTCAATTACGGCCTCGGATCCGAAATGGGCATGCTCGGCCTCCGTGATGTCTTCGTCGTCGCTAATCCCCACCACGACTCTCATCTCCTCTCCGATCATCATTCCCTCGCCGTCTCCAACCCCGCCACCGCCCTCGGCGTTGGAGTCGGCGTTATTCCTCTTCTCACCACTGGACCCTGCCTCGCTCCTGACGACGACAATTTCTTAACTACAAGGAATACTAACAGAGGCGGCGGAGGGATTCACCTGTGGCAGCAGAATCAACAATCCACGCAACATTATTTCAAGAAAACGCCGTCGTCTTCTCTCGATCATCACCACCTCCACAATTCCGACCTCATCGCCGGAGGAATCGCCGGTTTGCCTTCGTCGTCCTCGGCTACGCTCACGTGCCAGGATTGTGGGAACCAAGCCAAGAAAGATTGTACCCATAGACGATGCAGAACCTGCTGCCGAAGCCGAGGGTTCGATTGCACGACTCACGTGAAGAGCACGTGGGTTCCTGCTGCGCGGCGGAGAGAGCGCCAACTCATGGCTGTCACCGGCAACGCCACCGCTGGTTCTTCCGGTTCAACCTCCGGCGCGAAGAAACCGAGGCTTATTGCCTCGCAAACAACTTCTCATACTTCCACTTCCAACACCACGCCGCCGCGAAGCCTCGATACCAGCTCCAGCCACCAAGATGCCGGTTTCAAAGAGGGATTACCGGGCCAAGTACGAGCACCGGCGGTTTTCAAGTGCGTGAGAGTGACGGCGGTGGACGACGGCGACGACGAGTACGCGTATCAAGCGGTGGTGAAGATAGGGGGACACGTGTTCAAAGGATTTTTGTACGACCAAGGCGTCGAACCGGGCGACGGTTTTCCTAATGTATCGGAATTGCATTTGGGCGACGGCGGAAGCGGCGGAGGTGGAAACCGAAACAATCGGAATGGCGGTTCTTCTTCTTCTCCTCTTGTTGATCCATCGGCTGTTTACAATGCGGCCGCCATCGGCGGTGGTGGCGGTCCGGGATTTCTTGGCGGTTCAAATTATGGTAATCAAATCAACTGA 1077 56.64 MWSATQRSLNYGLGSEMGMLGLRDVFVVANPHHDSHLLSDHHSLAVSNPATALGVGVGVIPLLTTGPCLAPDDDNFLTTRNTNRGGGGIHLWQQNQQSTQHYFKKTPSSSLDHHHLHNSDLIAGGIAGLPSSSSATLTCQDCGNQAKKDCTHRRCRTCCRSRGFDCTTHVKSTWVPAARRRERQLMAVTGNATAGSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSLDTSSSHQDAGFKEGLPGQVRAPAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQGVEPGDGFPNVSELHLGDGGSGGGGNRNNRNGGSSSSPLVDPSAVYNAAAIGGGGGPGFLGGSNYGNQIN 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1338012 1339754 + Hsped.08g01530.1 Hepe08g0153 576125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0153 358 MobiDBLite consensus disorder prediction 187 243 - -
Hepe08g0153 358 NCBIfam LRP1 C-terminal domain 243 290 IPR006511 -
Hepe08g0153 358 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 73 335 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Hepe08g0153 358 NCBIfam putative zinc finger domain, LRP1 type 138 180 IPR006510 -
Hepe08g0153 358 MobiDBLite consensus disorder prediction 189 237 - -
Hepe08g0153 358 MobiDBLite consensus disorder prediction 296 327 - -
Hepe08g0153 358 Pfam Domain of unknown function (DUF702) 136 291 - -
Hepe08g0153 358 MobiDBLite consensus disorder prediction 312 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1646 Hepe-Chr1:81667132 Hepe08g0153 Hepe-Chr8:1338012 2.81e-37 dispersed
Hepe04g1564 Hepe-Chr4:71167132 Hepe08g0153 Hepe-Chr8:1338012 8.61e-45 dispersed
Hepe08g0153 Hepe-Chr8:1338012 Hepe10g0123 Hepe-Chr10:1239227 1.64e-32 dispersed
Hepe01g0978 Hepe-Chr1:74365692 Hepe08g0153 Hepe-Chr8:1338012 2.52e-65 transposed
Hepe08g0153 Hepe-Chr8:1338012 Hepe09g1164 Hepe-Chr9:13937303 4.03e-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56082 PF05142 DUF702 2.50E-62 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0153 K27807 - csv:101207487 471.085