Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0175 ATGGAACAGAGAAAGTACAGAGCCGATCTTCTTCTCCTCCTCTTTTTCCTCTCCTTTTCCGGCCGATCCGTCGCCGTTCACGCCTACCAGAACTACACCGTCGGCGATTCCCTCGGCTGGTTCGACAATTTGGAGAAACCTACCGTCGATTACCAAAATTGGACCGTCGGCAAGAACTTCAACCTCGGCGATTTTCTAATTTTTAATACGGACACCAATCACTCGGTTGTGCAAACATACAATTTCACCACATACAAGCTCTGCGACTACGACGACGCATCAGAAAAGGACACGACGGAATGGTCCGCCGCCGATCCGTCGGCGATCGCTCCGTACGCCGTAACGATGGCGGTCCCACTGATGAAAGAAGGGATCAATTACTTCTTCTCCGGCCACTACGACGGAGAGCAGTGCCAAAATGGGCAACAATTCAAAATCAACGTCACTCATGGCGAGGGCCTGCCGAAGAGCATGAGAGATTCTTCCGACGAAGCTCCGGCTCCGGCAATTCCCGACTCCGGCGACCAAACCGAATCTGCACCCGATACCATCGTCCCTTCCAGCTTCGACAATCCCCGAAACGACGTCGCTGACAGCGACGAAAAGGAAGCTTCAGGCTCCGTTTCGTTATCGCTTCACTTCAAATTTTATGAGCTTTTCTTCTTGTTGGTTGGTATTGGCTGCATGTTTCTTTTTACTGGGTGA 705 51.49 MEQRKYRADLLLLLFFLSFSGRSVAVHAYQNYTVGDSLGWFDNLEKPTVDYQNWTVGKNFNLGDFLIFNTDTNHSVVQTYNFTTYKLCDYDDASEKDTTEWSAADPSAIAPYAVTMAVPLMKEGINYFFSGHYDGEQCQNGQQFKINVTHGEGLPKSMRDSSDEAPAPAIPDSGDQTESAPDTIVPSSFDNPRNDVADSDEKEASGSVSLSLHFKFYELFFLLVGIGCMFLFTG 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1534247 1537446 - Hsped.08g01750.1 Hepe08g0175 576147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0175 234 Gene3D - 29 153 IPR008972 -
Hepe08g0175 234 Pfam Plastocyanin-like domain 40 142 IPR003245 GO:0009055(InterPro)
Hepe08g0175 234 FunFam Early nodulin-like protein 18 29 151 - -
Hepe08g0175 234 MobiDBLite consensus disorder prediction 152 200 - -
Hepe08g0175 234 SUPERFAMILY Cupredoxins 31 148 IPR008972 -
Hepe08g0175 234 PANTHER BLUE COPPER PROTEIN 16 163 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Hepe08g0175 234 MobiDBLite consensus disorder prediction 176 193 - -
Hepe08g0175 234 ProSiteProfiles Phytocyanin domain profile. 30 150 IPR003245 GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0175 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0470 Hepe-Chr3:7180291 Hepe08g0175 Hepe-Chr8:1534247 2.01e-30 dispersed
Hepe08g0175 Hepe-Chr8:1534247 Hepe03g1624 Hepe-Chr3:73141401 1.08e-11 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe10g0215 . 1 170 Phytocyanin Superfamily AT2G25060 50.3 7.0e-44 174.1
Hepe02g2107 . 16 175 Phytocyanin Superfamily AT5G15350 50.6 1.6e-45 179.5
Hepe10g0215 . 14 171 Phytocyanin Superfamily AT4G31840 54.0 4.7e-45 177.9
Hepe07g2420 . 23 135 Phytocyanin Superfamily AT3G18590 64.3 3.0e-37 152.1
Hepe07g2420 . 23 135 Phytocyanin Superfamily AT3G18590 64.3 3.0e-37 152.1
Hepe10g0215 . 5 172 Phytocyanin Superfamily AT5G25090 51.1 3.1e-39 158.7
Hepe10g0215 . 1 170 Phytocyanin Superfamily AT2G25060 50.3 7.0e-44 174.1
Hepe10g0215 . 14 171 Phytocyanin Superfamily AT4G31840 54.0 4.7e-45 177.9
Hepe02g2107 . 16 175 Phytocyanin Superfamily AT5G15350 50.6 1.6e-45 179.5
Hepe08g0175 . 23 226 Phytocyanin Superfamily AT1G08500 54.9 2.5e-59 225.7
Hepe09g1038 . 31 157 Phytocyanin Superfamily AT2G27035 53.5 2.3e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013663 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 1 1 1 26