Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0178 ATGAAATATTGCATGAATGCAGTCGGTGTAACAAGATTGCTAATTTTTCTAGCAACTGTAGCAGTCATCTTGGCCGTTTCGCCACCGGTTCCGGCGGATAAGTCGAAATTAAACAGTTGGTTTAATGAAAATGTGAAGTCCTTAAGCAAACGTAAGGCGGAGCTTGATCCAGCTCTTGTGGCGGCGGAAGCAAATGTGACGGTGATTAAAGTAATGGCGGACGGAAGTGGAGATTTCTTTACGATCACCGCCGCCGTCAACAGCGTTCCAGAGGGCAACACCAATCGCGTTGTGATTTGGATCGGAGGAGGCGTTTATAAAGAGAAGGTTAAGATTGATAGAAATAAGCCTTTTGTTACCCTTTATGGCTCTCCTACTAATATGCCTAATTTGACATTCAATGGGGATGCAAAGAAATTTGGTACCGTTTATAGTGCAACTTTGATTGTCGAGTCTGATTATTTCACCGCTTCCAATATCGTCATCGAGAATACATCGCCGAGGCCAACTGGTGGAAAAGGAGAACAAGCATTGGCAGCGAGACTATTTGGGACTAAATCAGCAATTTACAATTGCAAATTCCTTGGGTTCCAAGACACCCTTTGCGACGATGCCGGCTTACATCTCTTCAAGAATTGCTACATTCAAGGCACCGTCGACTTTATTTTCGGGAGAGGACAATCTATTTATTTGAATAGTGAGATTGAAGTGTTGGGAGATGGGGGGTTGGCAGTGATCACAGCACATTCAAGAGAATTGGAATCGGACACGAGTGGATATTCATTCGTGCATTGCAGAATTACTGGAACCGGCGGACCAAACACTTATTTGGGAAGAGCTTGGATGCCTAGGTCTAGAGTTATCTTTGCCTACACCACAATGGCCAATGTTATTCATTCCGTAGGCTGGAACCACATGCACCATCCTCATTACGATCAGACGGTTTTCTTCGGAGAATACAAGTGTTCGGGGCCGGGATCGGAGCCGAGCGGGCGTGTAAAATACGGCAAGCAGTTGACTGATGCCGAAGTGAAGCCGTACCTCACCCTTGATTTCTTGCAAAGTGATAAATGGTTGCTTCCTCCTCCTAGTCCTTCGACTTATAAACTTTTGTTGCAACAGTGA 1125 45.16 MKYCMNAVGVTRLLIFLATVAVILAVSPPVPADKSKLNSWFNENVKSLSKRKAELDPALVAAEANVTVIKVMADGSGDFFTITAAVNSVPEGNTNRVVIWIGGGVYKEKVKIDRNKPFVTLYGSPTNMPNLTFNGDAKKFGTVYSATLIVESDYFTASNIVIENTSPRPTGGKGEQALAARLFGTKSAIYNCKFLGFQDTLCDDAGLHLFKNCYIQGTVDFIFGRGQSIYLNSEIEVLGDGGLAVITAHSRELESDTSGYSFVHCRITGTGGPNTYLGRAWMPRSRVIFAYTTMANVIHSVGWNHMHHPHYDQTVFFGEYKCSGPGSEPSGRVKYGKQLTDAEVKPYLTLDFLQSDKWLLPPPSPSTYKLLLQQ 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1549825 1551574 - Hsped.08g01780.1 Hepe08g0178 576150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0178 374 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 35 359 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Hepe08g0178 374 Pfam Pectinesterase 70 355 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe08g0178 374 ProSitePatterns Pectinesterase signature 2. 215 224 IPR033131 -
Hepe08g0178 374 FunFam Pectinesterase 64 361 - -
Hepe08g0178 374 Gene3D - 63 363 IPR012334 -
Hepe08g0178 374 SUPERFAMILY Pectin lyase-like 68 361 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0178 Hepe-Chr8:1549825 Hepe09g0961 Hepe-Chr9:9736003 1.12e-126 dispersed
Hepe08g0178 Hepe-Chr8:1549825 Hepe10g0628 Hepe-Chr10:7799371 6.29e-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0178 K01051 - csv:101205095 552.747