Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0180 ATGATGGAAAGTGTGGCTCTGAAGCTCCCATCGTTCCAATTCATAAACCCTAATCGTTGCAGTTCCTGTTTCTCTTCCTCTCTCCGCAGATTCTCCTCTCCTTTCTCAGTTTCTGCTTCTGCTTCCACCGCCAGGGAAACCGACAACTTGCTCTCGCTTGGCCACACAACCCGACCTGATTTCCCTATCCTCCATCAGGAAGTGAATGGCTCTAAGCTTGTCTACTTGGATAACGCTGCCACTTCTCAGAAACCCATTGCTGTGTTGAATGCTTTGCGGAATTATTACGAGGGTTATAATTCAAATGTTCATCGTGGCATACACTATTTGAGTGCGAAGGCAACTGACGAGTATGAGCTGGCAAGAAAGAAAGTTGCGTCTTTTATCAATGCTGGAGATGCTAGAGAGATCGTTTTTACCAAGAATGCAACTGAAGCTATCAATCTAGTGGCTTATTCTTGGGGCCGAGACAATTTAAAACCAGAAGATGAGATCATACTTACAGTTGCTGAACATCATAGTGTCATTGTCCCTTGGCAACGTGTAGCTGAAAAGACTGGTGCTATTCTGAGGTTTGTGAGTTTAGGTGAACATGATGTTCCAAACTTGAAAGATTTAAAGGAGATGTTTTCAGCAAAAACGAAGCTTGTGGTTATTCATCATGTCTCAAATGTACTAGCATCTGTTCTTCCAATTGAAGATATAGTTGGCTGGGCACATCGTTTTGGGGCAAAAGTGCTAGTAGATGCATGCCAGAGTGTTCCACATATGGTTGTTGACGTCCAGGCTCTTGAGGCTGACTTTCTTGTTGCTTCTTCTCACAAGATGTGTGGGCCTACAGGCATCGGATTTTTATATGGAAAGTTTGATCTCTTGTCTGCAATGACTCCATTCTTAGGTGGTGGAGAGATGATCTCAGATGTATTTCTTGATCATTCCACATTTGCAGAACCACCTTCCAGATTTGAGGCTGGGACACCAGCAATTGGAGAAGCAATTGGGTTGGGAGCTGCTATTGATTATTTGTCTGGAATCGGCATGCAAAAGATTCATAGTTATGAAGAAGAATTGGCAAATTATCTGTATGAAGGCCTTCGTGCAGTCCCTAACATTCGCATATATGGTCCGGCTCCTTCTGCAAATGTTCAACGCGCTGCTCTGTGTTCTTTCAATATTGAAAACATTCATCCAACGGACATAGCAACCTTTCTTGATCAACAGCATGGTGTAGCCATCAGATCGGGACACCACTGTGCGCAGCCCCTCCATCGCGCACTTGGCGTCAGCTCGAGCGCACGAGCTAGCCTTTACTTCTACAACACAAAAGAGGATGTAGACTACTTTATCCAGGCTCTAAATGACACTTTTTGCCTAAGCTCCAAGTTTCAAATTCAAGCTTTCTCAAGAGACAGAGAAGCTACGACTCCTCCAAGTTCAACTCAATCCTCCATGGATATTGATCGAATTCATCACAGCGAAAACGAAGGAAGAAATTTACAGAGAGGAAGATTCGTTGGCCAAAACGCGGCAATTTTAGCGGTTCCTCAATCAAGATTCGCAAGATTAACATCTCGATTACTATTTCTCGCAGTGATTCTCCTCTTAATTCCTCACATTGCTCCTGTTTTCAACGAAAGAAAATTCCTCTTGTTCGATTCCAAAGATCCTCACTCCACCCTAACCAAACAACAATTCAATGACTTAATCGACGAATTGAAGACCGCCGAAATTCTCACAGAAGGTAAAAAGAGCCTCGTGTTGATTGCTGGATCGAATTCGAGCATCGAAGCTCCGAATCGCTATGCAGAGCATCTGAGAACGATGGGAGCGGATTTGGTAATCGAGAACGATTTTTTGCCGCATGACTCCTTTGAGAACGAATCGTTTGATATTGTGTTCACGCTAGGGCAGTTTGGAGCCGGATTTGTTGACCGTGTTCTTAGAAGCGGCGGCACGGTGGTTGTTCCGGCGAAAGATCTGACTCTAAATGTATATCTTGATGAGTTGGACTATACTTGCGTTTATTTAAAGCCTTACAGTGTTGAATTGATCATAATCGTGGCGGTGAAACCAAGTCCGGCTGATCATTCCGACGCCGGAGTTTTCGGTAGTAAGGAAGAATTAATGGCGTCTCGTGCTGTTGTTCCTCAGCGACAACTACGAATCCGAGGTGATGGTAAGCCGAAGATGGCGGCAGCGGCTGAAGGAAGAACAAGGCGAGTTCTTCAAGATATAGGAAATCTGGTGCCTGATCGAGCCGTGGAAGGAAAACTTGGACCTCAACAAGCAGAAAAGAACAAGAAAGCAATCACCAAAAATGTGACAAAGGCTGCAGTAACTGAGAAATGCAAAGCTGAGAAACAAAAGTTTGTACTCAGCTCTGCCGATAAGAGAAATATAATCATCATCAGCGATAGTAAATCAAGGGATAAGAATAAACGGAGTCTGACTTCAACCCTTAGTGCCAGAAGCAAGGCTGCTTGTGGACTCACCAATAAACCACTCGATTCAGTACCTAATATTGATGAAGCAGATTCCAACAACGAACTTGCAGTAGTTGAATACATCGATGATATGTACAAGTTTTACAAGCTTGCAGAAAATGAGAGCAGAGTATCGGATTACATGGGAGCACAGCCAGATTTGAGTGCTAAGATGAGATCCATTCTCATAGATTGGTTGATAGAAGTTCATCGCAAGTTTGAACTGATGCCAGAAACCCTTTACCTCACTGTAAACATTGTGGATCGATTCCTTTCCTTGAAGACTGTACCAAGGAGGGAACTTCAATTGGTTGGTATCAGCTCTATGCTGATAGCTTGCAAATATGAAGAGATTTGGGCCCCAGAGGTCAATGACTTTGTGAGTATATCTGCAAATACTTATCAGAGAGAACAGATTTTGGTGATGGAGAAAGTAATCTTGGGCAGGCTAGAATGGCTTCTAACAGTTCCTACACCTTATGTTTTTCTTGTTCGATATGTCAAGGCTTCTGAGCCGTCCGATGAGGAGATGGAGAACATGGTATTTTTTCTGGCTGAGCTTGGTCTGATGAACTATCCCATAGCAACATCATACAGGCCTTCAATGATTGCTTCAGCTGCTGTTTATACTGCAAGATGCACACTTGAAAAGAGTCCTATTTGGACAGCAACTTTGCAACATCATACAGGCTATGTTGAAGATGAGGAATGTGGGGAACTGCTTGTGAAGTTGCACCGTGAAGCTAGAGCAGTAGATGGAAAGCTGAAGGCTGTTTGTAGAAAATATACGAGTCCAGATCGAAGTGCAGTTGCTCTATTTCCTCCAGCTAAAAGTCTAACTCCAGATTTGTAG 3336 43.56 MMESVALKLPSFQFINPNRCSSCFSSSLRRFSSPFSVSASASTARETDNLLSLGHTTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLNALRNYYEGYNSNVHRGIHYLSAKATDEYELARKKVASFINAGDAREIVFTKNATEAINLVAYSWGRDNLKPEDEIILTVAEHHSVIVPWQRVAEKTGAILRFVSLGEHDVPNLKDLKEMFSAKTKLVVIHHVSNVLASVLPIEDIVGWAHRFGAKVLVDACQSVPHMVVDVQALEADFLVASSHKMCGPTGIGFLYGKFDLLSAMTPFLGGGEMISDVFLDHSTFAEPPSRFEAGTPAIGEAIGLGAAIDYLSGIGMQKIHSYEEELANYLYEGLRAVPNIRIYGPAPSANVQRAALCSFNIENIHPTDIATFLDQQHGVAIRSGHHCAQPLHRALGVSSSARASLYFYNTKEDVDYFIQALNDTFCLSSKFQIQAFSRDREATTPPSSTQSSMDIDRIHHSENEGRNLQRGRFVGQNAAILAVPQSRFARLTSRLLFLAVILLLIPHIAPVFNERKFLLFDSKDPHSTLTKQQFNDLIDELKTAEILTEGKKSLVLIAGSNSSIEAPNRYAEHLRTMGADLVIENDFLPHDSFENESFDIVFTLGQFGAGFVDRVLRSGGTVVVPAKDLTLNVYLDELDYTCVYLKPYSVELIIIVAVKPSPADHSDAGVFGSKEELMASRAVVPQRQLRIRGDGKPKMAAAAEGRTRRVLQDIGNLVPDRAVEGKLGPQQAEKNKKAITKNVTKAAVTEKCKAEKQKFVLSSADKRNIIIISDSKSRDKNKRSLTSTLSARSKAACGLTNKPLDSVPNIDEADSNNELAVVEYIDDMYKFYKLAENESRVSDYMGAQPDLSAKMRSILIDWLIEVHRKFELMPETLYLTVNIVDRFLSLKTVPRRELQLVGISSMLIACKYEEIWAPEVNDFVSISANTYQREQILVMEKVILGRLEWLLTVPTPYVFLVRYVKASEPSDEEMENMVFFLAELGLMNYPIATSYRPSMIASAAVYTARCTLEKSPIWTATLQHHTGYVEDEECGELLVKLHREARAVDGKLKAVCRKYTSPDRSAVALFPPAKSLTPDL 1111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1558417 1571782 - Hsped.08g01800.1 Hepe08g0180 576152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0180 1111 CDD SufS_like 74 452 IPR010970 GO:0006534(InterPro)|GO:0030170(InterPro)|GO:0031071(InterPro)
Hepe08g0180 1111 SUPERFAMILY Cyclin-like 986 1107 IPR036915 -
Hepe08g0180 1111 Pfam Cyclin, C-terminal domain 985 1103 IPR004367 -
Hepe08g0180 1111 Pfam Cyclin, N-terminal domain 858 982 IPR006671 -
Hepe08g0180 1111 SUPERFAMILY PLP-dependent transferases 57 454 IPR015424 -
Hepe08g0180 1111 Gene3D - 858 1099 - -
Hepe08g0180 1111 Pfam Aminotransferase class-V 74 448 IPR000192 -
Hepe08g0180 1111 SMART Cyclin_C_2 985 1104 IPR004367 -
Hepe08g0180 1111 PANTHER CYSTEINE DESULFURASE 48 462 - -
Hepe08g0180 1111 SMART cyclin_7 892 976 IPR013763 -
Hepe08g0180 1111 SMART cyclin_7 989 1074 IPR013763 -
Hepe08g0180 1111 FunFam G2/mitotic-specific cyclin-1 980 1099 - -
Hepe08g0180 1111 NCBIfam SufS family cysteine desulfurase 57 455 IPR010970 GO:0006534(InterPro)|GO:0030170(InterPro)|GO:0031071(InterPro)
Hepe08g0180 1111 SUPERFAMILY Cyclin-like 847 980 IPR036915 -
Hepe08g0180 1111 ProSitePatterns Cyclins signature. 887 918 IPR048258 -
Hepe08g0180 1111 Gene3D - 872 983 - -
Hepe08g0180 1111 FunFam G2/mitotic-specific cyclin 871 979 - -
Hepe08g0180 1111 CDD CYCLIN_AtCycB-like_rpt1 836 980 - -
Hepe08g0180 1111 Gene3D Aspartate Aminotransferase, domain 1 58 452 IPR015422 -
Hepe08g0180 1111 Gene3D - 85 345 IPR015421 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0012 Hepe-Chr2:280260 Hepe08g0180 Hepe-Chr8:1558417 1.44e-63 dispersed
Hepe04g0519 Hepe-Chr4:57680920 Hepe08g0180 Hepe-Chr8:1558417 3.19e-121 dispersed
Hepe04g1666 Hepe-Chr4:71896627 Hepe08g0180 Hepe-Chr8:1558417 5.26e-68 dispersed
Hepe08g0180 Hepe-Chr8:1558417 Hepe08g1310 Hepe-Chr8:14851347 8.31e-39 dispersed
Hepe08g0180 Hepe-Chr8:1558417 Hepe01g1808 Hepe-Chr1:83084556 6.37e-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0180 K11717 - csv:101222630 779.63