Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0186 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTACCATGCAACAGCATGTTCACACTCGTGACTGTGAGATGCGGTCATTGTTCAAATCTGCTGTCTGTAAACATGGGAGCTACTCTTCAAGTTGTTCCTCCTCAAGATTCCCAACAGGGTCATAAACAGCAGCAGGTGAGCAGTGGGGATTCGAGCAAGGACAGAGGTTCTTCTTCTTCTTCTTCTTCTAAATGCAGTAAAAATGGATCTCTTGATTCTACTGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAGCGTGTTCCTTCTGCGTATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAACAATCCTGACATAAGCCACAGGGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCACATCCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAACAAATTAA 522 43.68 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGATLQVVPPQDSQQGHKQQQVSSGDSSKDRGSSSSSSSKCSKNGSLDSTERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTN 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1664329 1676129 + Hsped.08g01860.1 Hepe08g0186 576158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0186 173 CDD HMG-box_SF 118 154 - -
Hepe08g0186 173 SUPERFAMILY HMG-box 109 157 IPR036910 -
Hepe08g0186 173 MobiDBLite consensus disorder prediction 96 113 - -
Hepe08g0186 173 MobiDBLite consensus disorder prediction 59 95 - -
Hepe08g0186 173 MobiDBLite consensus disorder prediction 59 121 - -
Hepe08g0186 173 Pfam YABBY protein 7 164 IPR006780 GO:0007275(InterPro)
Hepe08g0186 173 FunFam Axial regulator YABBY 109 173 - -
Hepe08g0186 173 PANTHER PROTEIN YABBY 6-RELATED 6 171 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
Hepe08g0186 173 Gene3D High mobility group box domain 100 159 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0186 K25796 - - csv:101222154 301.597
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1154 Hepe-Chr6:60868855 Hepe08g0186 Hepe-Chr8:1664329 8.30e-51 dispersed
Hepe06g1651 Hepe-Chr6:67400673 Hepe08g0186 Hepe-Chr8:1664329 9.67e-55 dispersed
Hepe08g0186 Hepe-Chr8:1664329 Hepe09g0669 Hepe-Chr9:6330487 4.40e-57 dispersed
Hepe08g0186 Hepe-Chr8:1664329 Hepe08g2532 Hepe-Chr8:66885807 8.68e-59 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g1651 . 78 235 C2C2-YABBY Transcription Factor Family AT2G45190 60.5 1.3e-44 176.4
Hepe06g1154 . 71 225 C2C2-YABBY Transcription Factor Family AT2G45190 55.5 5.6e-40 161.0
Hepe08g0186 . 1 171 C2C2-YABBY Transcription Factor Family AT1G08465 64.4 1.5e-54 209.5
Hepe06g1651 . 34 225 C2C2-YABBY Transcription Factor Family AT1G08465 53.9 3.2e-44 175.3
Hepe06g1154 . 23 202 C2C2-YABBY Transcription Factor Family AT1G08465 54.4 1.7e-42 169.5
Hepe09g0669 . 5 182 C2C2-YABBY Transcription Factor Family AT1G08465 53.3 5.1e-42 167.9
Hepe06g1651 . 45 234 C2C2-YABBY Transcription Factor Family AT4G00180 55.3 1.8e-51 199.5
Hepe06g1154 . 33 223 C2C2-YABBY Transcription Factor Family AT4G00180 55.3 4.6e-47 184.9
Hepe10g1628 . 1 176 C2C2-YABBY Transcription Factor Family AT1G23420 50.3 2.0e-39 159.8
Hepe08g2532 . 10 170 C2C2-YABBY Transcription Factor Family AT2G26580 74.5 4.7e-63 237.7
Hepe09g0669 . 7 177 C2C2-YABBY Transcription Factor Family AT2G26580 70.8 6.1e-63 237.3
Hepe08g0186 . 1 172 C2C2-YABBY Transcription Factor Family AT2G26580 57.6 1.0e-46 183.3
Hepe06g1651 . 34 198 C2C2-YABBY Transcription Factor Family AT2G26580 54.1 3.7e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004363 1 4 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 1 2 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56084 PF04690 YABBY 1.60E-75 CL0114 Hepe TF