Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0186 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTACCATGCAACAGCATGTTCACACTCGTGACTGTGAGATGCGGTCATTGTTCAAATCTGCTGTCTGTAAACATGGGAGCTACTCTTCAAGTTGTTCCTCCTCAAGATTCCCAACAGGGTCATAAACAGCAGCAGGTGAGCAGTGGGGATTCGAGCAAGGACAGAGGTTCTTCTTCTTCTTCTTCTTCTAAATGCAGTAAAAATGGATCTCTTGATTCTACTGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAGCGTGTTCCTTCTGCGTATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAACAATCCTGACATAAGCCACAGGGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCACATCCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAACAAATTAA 522 43.68 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGATLQVVPPQDSQQGHKQQQVSSGDSSKDRGSSSSSSSKCSKNGSLDSTERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTN 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1664329 1676129 + Hsped.08g01860.1 Hepe08g0186 576158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0186 173 CDD HMG-box_SF 118 154 - -
Hepe08g0186 173 SUPERFAMILY HMG-box 109 157 IPR036910 -
Hepe08g0186 173 MobiDBLite consensus disorder prediction 96 113 - -
Hepe08g0186 173 MobiDBLite consensus disorder prediction 59 95 - -
Hepe08g0186 173 MobiDBLite consensus disorder prediction 59 121 - -
Hepe08g0186 173 Pfam YABBY protein 7 164 IPR006780 GO:0007275(InterPro)
Hepe08g0186 173 FunFam Axial regulator YABBY 109 173 - -
Hepe08g0186 173 PANTHER PROTEIN YABBY 6-RELATED 6 171 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
Hepe08g0186 173 Gene3D High mobility group box domain 100 159 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1154 Hepe-Chr6:60868855 Hepe08g0186 Hepe-Chr8:1664329 8.30e-51 dispersed
Hepe06g1651 Hepe-Chr6:67400673 Hepe08g0186 Hepe-Chr8:1664329 9.67e-55 dispersed
Hepe08g0186 Hepe-Chr8:1664329 Hepe09g0669 Hepe-Chr9:6330487 4.40e-57 dispersed
Hepe08g0186 Hepe-Chr8:1664329 Hepe08g2532 Hepe-Chr8:66885807 8.68e-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56084 PF04690 YABBY 1.60E-75 CL0114 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0186 K25796 - csv:101222154 301.597