Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0193 ATGGATGAAGAACACGATGAAATTGAAGTCCCCTCTTATTTTGTCTGCCCAATTTCCCTCCAACTCATGAGAGATCCAGTCACAATCTCCACCGGCATCACTTACGATCGAGCCAACATCGAAAAATGGCTATTTTCTTGCAACAAAAAGACTTGCCCCATTACCAAACAGCCCTTATCCGACCCCGATCTACTAACCCCAAATCACACTCTTCGCCGTTTGATCCAATCTTGGTGCACTCTCAATTCCTCTCATGGAATTGAACGAATTCCAACTCCAAAATCTCCAATTGACAAAACCCATGTCGCCAAAATTCTCAAAAATGTCCAAAAATTCCCCAATTCGACCCACAAATGCCTCCTTGCCCTCAAAGCCATCGCCTTGGAGAGCCAAAGAAATCGCAACCTCGTGGCGGAATCCGACGGTGCATTTGACTTTCTAGCCGCCGTTGTAAAGAGTGGCAATGATAACAGTAATATTGATTCGATTGAATTAGCGGTTGAAATTCTTTTCCACCTCAAATCCTCCGAATCCCATCTCAAGAATCTTGTAAATGCCGATGGTAACTTCATAAATTCTCTTACTTTTGTCCTCCAAAATGGGAATTGCCAATCTAGAGCCTACGCGGTAATGCTGCTCAAATCAAGCTTGGAACTTGCGGATCCAATTCGGTTGATGAGCATTCAGACGAAACTTTTGTGTGAAGTTGTGCGTGTCATACATGATCAAATCTCTCACCAAGCCTCGAAATCGGCGTTGAAGGTTCTTGTGGATGCGTGTCCGTGGGGACGGAACCGTGTCAAGGCGGTGGAGGGCGGCGCGGTCGGAGTGTTGGTGGAGTTGCTTTTGAACTCGGGTGAAAGGCGGTGGTCGGAGCTAGTGTTGGTGGTTTTGGATCAGCTTTGCGGGTGCGCCGAGGGGCGGGAGAAGTTGATGCAACATGGGGCTGGGGTTGCGGTTGTGTCCAAGAAAATACTTAGGGTTTCGGCAATGGCGAGCGATCGAGCGGTGAGGATATTGTCGTCGATATGTCGGTTTTCGGCGTCGGTGAAGGTATTTCAAGAAATGTTGGAGGTTGGGGCGGTGGCGAAGTTGTGTTTGGTGTTGCAAATGGATTGTAGTTTGAAGACAAGGGAGAAGGCAAGAGATATACTAAAGTTGCATTCTAGGGTTTGGAGTAACTCTTCTTGTATTCCTCCACATTTGTTGTCAGCTTATCCATCATCTTGA 1230 46.99 MDEEHDEIEVPSYFVCPISLQLMRDPVTISTGITYDRANIEKWLFSCNKKTCPITKQPLSDPDLLTPNHTLRRLIQSWCTLNSSHGIERIPTPKSPIDKTHVAKILKNVQKFPNSTHKCLLALKAIALESQRNRNLVAESDGAFDFLAAVVKSGNDNSNIDSIELAVEILFHLKSSESHLKNLVNADGNFINSLTFVLQNGNCQSRAYAVMLLKSSLELADPIRLMSIQTKLLCEVVRVIHDQISHQASKSALKVLVDACPWGRNRVKAVEGGAVGVLVELLLNSGERRWSELVLVVLDQLCGCAEGREKLMQHGAGVAVVSKKILRVSAMASDRAVRILSSICRFSASVKVFQEMLEVGAVAKLCLVLQMDCSLKTREKARDILKLHSRVWSNSSCIPPHLLSAYPSS 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1750951 1752180 + Hsped.08g01930.1 Hepe08g0193 576165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0193 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 89 IPR013083 -
Hepe08g0193 409 CDD RING-Ubox_PUB 11 64 IPR045210 -
Hepe08g0193 409 ProSiteProfiles U-box domain profile. 9 85 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g0193 409 Gene3D - 229 404 IPR011989 -
Hepe08g0193 409 Gene3D - 100 219 IPR011989 -
Hepe08g0193 409 Pfam U-box domain 10 82 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g0193 409 SUPERFAMILY RING/U-box 3 87 - -
Hepe08g0193 409 SUPERFAMILY ARM repeat 113 392 IPR016024 -
Hepe08g0193 409 SMART Ubox_2 13 78 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g0193 409 FunFam RING-type E3 ubiquitin transferase 2 88 - -
Hepe08g0193 409 PANTHER WDSAM1 PROTEIN 6 405 IPR045185 GO:0061630(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1125 Hepe-Chr4:66242902 Hepe08g0193 Hepe-Chr8:1750951 1.37e-41 dispersed
Hepe05g1830 Hepe-Chr5:68632657 Hepe08g0193 Hepe-Chr8:1750951 1.48e-62 dispersed
Hepe08g0193 Hepe-Chr8:1750951 Hepe09g1227 Hepe-Chr9:15748778 1.84e-90 dispersed
Hepe02g1008 Hepe-Chr2:12384485 Hepe08g0193 Hepe-Chr8:1750951 3.45e-53 transposed
Hepe05g0444 Hepe-Chr5:5769797 Hepe08g0193 Hepe-Chr8:1750951 4.36e-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0193 - - - 0.0