Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0198 ATGTCTGGTTCTCGAGCTCCCAACTCTTCCGGACACCCCTCTGACCAGATCATGCACTCTCTTAAACGCCAGCTCCCTTTCTCTTCTATGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTCGCTCCGGACCCTCCACTCGCCGATCATCAACCTGACGCCATCCTAGTCAAATCTCCGCAATTGAAGCGGAAGAGTGAGGTAGCAGATTATGAAGCTGAGTCAACCGATAGAGCAACTGGTCCTAGATTTACTGAGGCAGTTAACAGTCCCCATCAAACACCTGTATCTGTGAAAGGAGGAAAAGGAAGCAAATCAAGGCTAACCAAATGCAGTAGATCGGGGCCACAGACTCCCATGTCAAATATTGGTTCACCTTCTGCAAACAATCTTACTCCAGCTGGTCCCTGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTTATTACTCTGATCAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCAGACACTTTGGAGGTACAAAAAAGAAGAATATATGATATAACAAATGTCCTCGAAGGAATTGGTCTTATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGATCAGGGGATGACGATGACAATTATGCTGGTCTACAGGCAGAAGTAGAGAACCTTTCCATGGAGGAGCGTGGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTTTTTGTAACTGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTCAGTCAGTTTGAAGAGAAGTTTGAGGAGATAAATGGTGTGGAAGTGCCCCCAAGCTTGCCGTCAAGTTCAGGGTTAAATGAAGAAACACCTTCAACAACGATAGTAGCAGAGGACACCAGGGGAAAGGAAATTGAAACGCAGGAGCAAGATGTACACAGAATGTGCTCCGATCTAAATGCCTCACAGGACTTCGTCGGAGGAATCATGAAAATTGTTCCCTCGGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGTATTACTGACATGTGGAGAACTGAACGTATCCTCTCAATTTAA 1275 44.94 MSGSRAPNSSGHPSDQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDPPLADHQPDAILVKSPQLKRKSEVADYEAESTDRATGPRFTEAVNSPHQTPVSVKGGKGSKSRLTKCSRSGPQTPMSNIGSPSANNLTPAGPCRYDSSLGLLTKKFITLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDDDDNYAGLQAEVENLSMEERGLDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVPPSLPSSSGLNEETPSTTIVAEDTRGKEIETQEQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTERILSI 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1815151 1822589 + Hsped.08g01980.1 Hepe08g0198 576170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0198 424 CDD E2F_DD 216 322 IPR032198 GO:0046983(InterPro)
Hepe08g0198 424 MobiDBLite consensus disorder prediction 109 131 - -
Hepe08g0198 424 Coils Coil 218 255 - -
Hepe08g0198 424 Gene3D - 134 207 IPR036388 -
Hepe08g0198 424 Gene3D - 214 322 - -
Hepe08g0198 424 MobiDBLite consensus disorder prediction 67 81 - -
Hepe08g0198 424 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Hepe08g0198 424 Pfam E2F transcription factor CC-MB domain 221 321 IPR032198 GO:0046983(InterPro)
Hepe08g0198 424 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
Hepe08g0198 424 MobiDBLite consensus disorder prediction 67 131 - -
Hepe08g0198 424 MobiDBLite consensus disorder prediction 84 102 - -
Hepe08g0198 424 PANTHER TRANSCRIPTION FACTOR E2F 31 418 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Hepe08g0198 424 MobiDBLite consensus disorder prediction 1 23 - -
Hepe08g0198 424 MobiDBLite consensus disorder prediction 1 55 - -
Hepe08g0198 424 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Hepe08g0198 424 FunFam E2F transcription factor 1 134 207 - -
Hepe08g0198 424 Coils Coil 156 176 - -
Hepe08g0198 424 SUPERFAMILY E2F-DP heterodimerization region 217 322 IPR037241 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2253 Hepe-Chr7:66935054 Hepe08g0198 Hepe-Chr8:1815151 7.41e-10 dispersed
Hepe08g0198 Hepe-Chr8:1815151 Hepe10g0142 Hepe-Chr10:1479295 3.47e-67 dispersed
Hepe04g1065 Hepe-Chr4:65315359 Hepe08g0198 Hepe-Chr8:1815151 2.50e-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56086 PF16421 E2F_CC-MB 2.50E-35 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0198 K06620 - csv:101219318 781.941