Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0198 ATGTCTGGTTCTCGAGCTCCCAACTCTTCCGGACACCCCTCTGACCAGATCATGCACTCTCTTAAACGCCAGCTCCCTTTCTCTTCTATGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTCGCTCCGGACCCTCCACTCGCCGATCATCAACCTGACGCCATCCTAGTCAAATCTCCGCAATTGAAGCGGAAGAGTGAGGTAGCAGATTATGAAGCTGAGTCAACCGATAGAGCAACTGGTCCTAGATTTACTGAGGCAGTTAACAGTCCCCATCAAACACCTGTATCTGTGAAAGGAGGAAAAGGAAGCAAATCAAGGCTAACCAAATGCAGTAGATCGGGGCCACAGACTCCCATGTCAAATATTGGTTCACCTTCTGCAAACAATCTTACTCCAGCTGGTCCCTGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTTATTACTCTGATCAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCAGACACTTTGGAGGTACAAAAAAGAAGAATATATGATATAACAAATGTCCTCGAAGGAATTGGTCTTATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGATCAGGGGATGACGATGACAATTATGCTGGTCTACAGGCAGAAGTAGAGAACCTTTCCATGGAGGAGCGTGGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTTTTTGTAACTGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTCAGTCAGTTTGAAGAGAAGTTTGAGGAGATAAATGGTGTGGAAGTGCCCCCAAGCTTGCCGTCAAGTTCAGGGTTAAATGAAGAAACACCTTCAACAACGATAGTAGCAGAGGACACCAGGGGAAAGGAAATTGAAACGCAGGAGCAAGATGTACACAGAATGTGCTCCGATCTAAATGCCTCACAGGACTTCGTCGGAGGAATCATGAAAATTGTTCCCTCGGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGTATTACTGACATGTGGAGAACTGAACGTATCCTCTCAATTTAA 1275 44.94 MSGSRAPNSSGHPSDQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDPPLADHQPDAILVKSPQLKRKSEVADYEAESTDRATGPRFTEAVNSPHQTPVSVKGGKGSKSRLTKCSRSGPQTPMSNIGSPSANNLTPAGPCRYDSSLGLLTKKFITLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDDDDNYAGLQAEVENLSMEERGLDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVPPSLPSSSGLNEETPSTTIVAEDTRGKEIETQEQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTERILSI 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1815151 1822589 + Hsped.08g01980.1 Hepe08g0198 576170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0198 424 CDD E2F_DD 216 322 IPR032198 GO:0046983(InterPro)
Hepe08g0198 424 MobiDBLite consensus disorder prediction 109 131 - -
Hepe08g0198 424 Coils Coil 218 255 - -
Hepe08g0198 424 Gene3D - 134 207 IPR036388 -
Hepe08g0198 424 Gene3D - 214 322 - -
Hepe08g0198 424 MobiDBLite consensus disorder prediction 67 81 - -
Hepe08g0198 424 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Hepe08g0198 424 Pfam E2F transcription factor CC-MB domain 221 321 IPR032198 GO:0046983(InterPro)
Hepe08g0198 424 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
Hepe08g0198 424 MobiDBLite consensus disorder prediction 67 131 - -
Hepe08g0198 424 MobiDBLite consensus disorder prediction 84 102 - -
Hepe08g0198 424 PANTHER TRANSCRIPTION FACTOR E2F 31 418 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Hepe08g0198 424 MobiDBLite consensus disorder prediction 1 23 - -
Hepe08g0198 424 MobiDBLite consensus disorder prediction 1 55 - -
Hepe08g0198 424 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Hepe08g0198 424 FunFam E2F transcription factor 1 134 207 - -
Hepe08g0198 424 Coils Coil 156 176 - -
Hepe08g0198 424 SUPERFAMILY E2F-DP heterodimerization region 217 322 IPR037241 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0198 K06620 - - csv:101219318 781.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2253 Hepe-Chr7:66935054 Hepe08g0198 Hepe-Chr8:1815151 7.41e-10 dispersed
Hepe08g0198 Hepe-Chr8:1815151 Hepe10g0142 Hepe-Chr10:1479295 3.47e-67 dispersed
Hepe04g1065 Hepe-Chr4:65315359 Hepe08g0198 Hepe-Chr8:1815151 2.50e-161 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe07g2253 . 3 377 E2F-DP Transcription Factor Family AT3G48160 56.1 6.2e-101 364.8
Hepe04g1065 . 11 433 E2F-DP Transcription Factor Family AT2G36010 57.1 5.5e-120 428.3
Hepe08g0198 . 21 419 E2F-DP Transcription Factor Family AT2G36010 56.3 9.7e-117 417.5
Hepe08g0198 . 20 419 E2F-DP Transcription Factor Family AT5G22220 59.8 8.1e-113 404.4
Hepe10g0142 . 148 404 E2F-DP Transcription Factor Family AT1G47870 52.9 7.0e-65 245.0
Hepe08g0198 . 139 416 E2F-DP Transcription Factor Family AT1G47870 50.7 1.5e-62 237.3
Hepe08g0198 . 20 419 E2F-DP Transcription Factor Family AT5G22220 59.8 8.1e-113 404.4
Hepe04g1065 . 11 433 E2F-DP Transcription Factor Family AT2G36010 57.1 5.5e-120 428.3
Hepe08g0198 . 21 419 E2F-DP Transcription Factor Family AT2G36010 56.3 9.7e-117 417.5
Hepe10g0142 . 148 404 E2F-DP Transcription Factor Family AT1G47870 52.9 7.0e-65 245.0
Hepe08g0198 . 139 416 E2F-DP Transcription Factor Family AT1G47870 50.7 1.5e-62 237.3
Hepe07g2253 . 3 377 E2F-DP Transcription Factor Family AT3G48160 56.1 6.2e-101 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56086 PF16421 E2F_CC-MB 2.50E-35 No_clan Hepe TF