Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe08g0219 | ATGGCGGAAGAACATCGATGCCAAGCGCCGAAGCTCTGCGTCAACAACTGCGGATTCTTCGGTAGTCCAGCCACGGGAGATTTCTGTTCCAAGTGCTACCGAGATCTACAGCTAAAGGAACAACAATCTTCATCCGCCAAACTCGCCTTAAACCAAACCCTCCTAACATCCGCCGTCGCCTCCTCCTCCTCCTTCGTGGATGCCTCCTTCATAAATCTCAAATTAGCCTCACCGGAAGCGAACCAGTCCGTTCCGACGACGGCGGATGTAGCGGTGGCGGCGCCGGGACAACAGCAACAGGCGAGCCGATGTACGACGTGCAGGCGGCGCGTGGGATTGACGGGTTTCAAGTGCAGATGCGGGATGGTGTACTGTGGGACTCACCGGTACCCGGAGCAACACGGGTGCGAATTTGACTTCAAGGGGATGGGGAAGGAGCAAATCGCGAAGGCGAATCCGGTGGTGAAAGGGGAGAAATTGCAGAAGATCTGA | 492 | 56.3 | MAEEHRCQAPKLCVNNCGFFGSPATGDFCSKCYRDLQLKEQQSSSAKLALNQTLLTSAVASSSSFVDASFINLKLASPEANQSVPTTADVAVAAPGQQQQASRCTTCRRRVGLTGFKCRCGMVYCGTHRYPEQHGCEFDFKGMGKEQIAKANPVVKGEKLQKI | 163 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 1948729 | 1949892 | + | Hsped.08g02190.1 | Hepe08g0219 | 576191 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe08g0219 | 163 | ProSiteProfiles | Zinc finger A20-type profile. | 7 | 41 | IPR002653 | GO:0003677(InterPro)|GO:0008270(InterPro) | |
| Hepe08g0219 | 163 | SMART | A20_3 | 10 | 34 | IPR002653 | GO:0003677(InterPro)|GO:0008270(InterPro) | |
| Hepe08g0219 | 163 | Gene3D | - | 1 | 58 | - | - | |
| Hepe08g0219 | 163 | Pfam | A20-like zinc finger | 12 | 34 | IPR002653 | GO:0003677(InterPro)|GO:0008270(InterPro) | |
| Hepe08g0219 | 163 | SMART | AN1_Zf_4 | 104 | 141 | IPR000058 | GO:0008270(InterPro) | |
| Hepe08g0219 | 163 | SUPERFAMILY | AN1-like Zinc finger | 91 | 158 | IPR035896 | - | |
| Hepe08g0219 | 163 | Pfam | AN1-like Zinc finger | 104 | 140 | IPR000058 | GO:0008270(InterPro) | |
| Hepe08g0219 | 163 | FunFam | Zinc finger AN1-type containing 6 | 77 | 159 | - | - | |
| Hepe08g0219 | 163 | PANTHER | AN1-TYPE ZINC FINGER PROTEIN | 8 | 163 | IPR050652 | - | |
| Hepe08g0219 | 163 | ProSiteProfiles | Zinc finger AN1-type profile. | 98 | 144 | IPR000058 | GO:0008270(InterPro) | |
| Hepe08g0219 | 163 | Gene3D | - | 76 | 159 | IPR035896 | - | |
| Hepe08g0219 | 163 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 12 | 52 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe04g1023 | Hepe-Chr4:64878316 | Hepe08g0219 | Hepe-Chr8:1948729 | 9.83e-57 | dispersed | |
| Hepe08g0111 | Hepe-Chr8:943820 | Hepe08g0219 | Hepe-Chr8:1948729 | 5.69e-40 | dispersed | |
| Hepe08g0219 | Hepe-Chr8:1948729 | Hepe09g1107 | Hepe-Chr9:12424974 | 3.91e-39 | dispersed | |
| Hepe08g0219 | Hepe-Chr8:1948729 | Hepe06g1619 | Hepe-Chr6:67041129 | 1.28e-40 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe08g0219 | - | - | - | 0.0 |