Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0239 ATGAGGGCGTTGCAATTGCATCTTAATCTTGTAAACCCATTTTGCCATTTCTGCCCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTCTAAATCTCTCGCCATTGCTTGTTTTTAAACCTATAAAATACCTCCATCTTCAGAAATTCAATCCTTCTCGAAGTTCCCATCGAACCCATTTCGCCATTGCTTCCATGGCCGATTCCGCTCTTTCCACAAGCTCAGAGACGAAGACGAAACCTTTCTCTGTTCTTTTTGTGTGCTTGGGCAACATCTGCAGAAGCCCAGCTGCTGAAGGAGTATTCAGAGACCTGGTCATCAAGAAGGGTCTCGATTCCAAATTCTTAATCGATTCTGCTGGCACCATTGGTTATCATGCGGGTAATGAGGCCGACCCAAGAATGAGGGCAGCCTCTCAACAACGTGGGATAGCGATAACATCTCTATCTAGGCCAATCAAGGCATCTGATTTTGTAAAATTTGATCTTATTCTTGCCATGGACAAGCAAAACAAAGAGGATCTATTAAGGGCTTTTGATAGGTGGGAAATTAGGGATACCCTTCCTGATGCATATAAGAAGGTCAAATTAATGTGCTCGTATTGTCGAAAGCATGAAGAAACAGAAGTGCCGGATCCTTATTACGGCGGGCAACAAGGTTTTGAGAAGGTTCTGGATTTGCTTGAAGATGCCTGCGAATCACTGTTGGAAAGCATCTTAGCAGAGAACAAACACATTTCAGATTAA 750 42.93 MRALQLHLNLVNPFCHFCPASSSSSSSSSSSLNLSPLLVFKPIKYLHLQKFNPSRSSHRTHFAIASMADSALSTSSETKTKPFSVLFVCLGNICRSPAAEGVFRDLVIKKGLDSKFLIDSAGTIGYHAGNEADPRMRAASQQRGIAITSLSRPIKASDFVKFDLILAMDKQNKEDLLRAFDRWEIRDTLPDAYKKVKLMCSYCRKHEETEVPDPYYGGQQGFEKVLDLLEDACESLLESILAENKHISD 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2144527 2147052 + Hsped.08g02390.1 Hepe08g0239 576211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0239 249 FunFam Low molecular weight protein-tyrosine-phosphatase 82 245 - -
Hepe08g0239 249 SUPERFAMILY Phosphotyrosine protein phosphatases I 81 240 IPR036196 -
Hepe08g0239 249 CDD LMWPTP 84 238 - -
Hepe08g0239 249 Pfam Low molecular weight phosphotyrosine protein phosphatase 85 237 IPR023485 -
Hepe08g0239 249 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 65 246 IPR052995 -
Hepe08g0239 249 Gene3D - 66 245 - -
Hepe08g0239 249 PRINTS LMW phosphotyrosine protein phosphatase signature 128 144 IPR017867 GO:0004725(InterPro)|GO:0006470(InterPro)
Hepe08g0239 249 PRINTS LMW phosphotyrosine protein phosphatase signature 211 226 IPR017867 GO:0004725(InterPro)|GO:0006470(InterPro)
Hepe08g0239 249 PRINTS LMW phosphotyrosine protein phosphatase signature 85 102 IPR017867 GO:0004725(InterPro)|GO:0006470(InterPro)
Hepe08g0239 249 SMART LMWPc_2 83 239 IPR023485 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0239 K25307 - - csv:101207515 384.8
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1176 Blo03g01059 . . . . . Bma14g00419 . . . . . . . . . . . . . . . . . Cla02g02139 Cam02g2272 Cec02g2310 Cco02g2353 Clacu02g2250 Cmu02g2183 Cre02g2507 . . Cone18ag0218 Cone11ag1360 . Csa06g01286 Chy11g00890 . . . Bda07g00669 . . Bpe11g00849 . . Sed05g1209 Cmo02g01379 . Cma02g01340 . Car02g01126 . . . Bhi10g00068 Tan05g0144 Cmetu11g0267 . Hepe08g0239 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe04g1268 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 61.6 1.7e-190 662.9
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.5e-178 623.2
Hepe02g2078 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 64.2 1.3e-151 533.1
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 67.5 0.0e+00 1165.6
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.8 0.0e+00 1112.8
Hepe09g0582 . 1 1206 Protein tyrosine phosphatase (PTP) family AT5G58160 54.1 5.5e-313 1070.8
Hepe08g1059 . 56 321 Protein tyrosine phosphatase (PTP) family AT5G58160 64.6 1.9e-92 338.2
Hepe01g0559 . 79 386 Protein tyrosine phosphatase (PTP) family AT1G71860 66.5 6.6e-120 427.6
Hepe09g0013 . 1 864 Protein tyrosine phosphatase (PTP) family AT5G23720 62.8 5.1e-300 1027.3
Hepe03g0164 . 97 236 Protein tyrosine phosphatase (PTP) family AT3G06110 51.1 1.2e-37 153.3
Hepe02g0068 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 3.0e-71 265.0
Hepe01g1069 . 92 372 Protein tyrosine phosphatase (PTP) family AT3G52180 68.3 1.1e-112 403.3
Hepe01g0659 . 4 278 Protein tyrosine phosphatase (PTP) family AT3G10940 65.8 5.3e-107 384.4
Hepe02g1823 . 14 462 Protein tyrosine phosphatase (PTP) family AT3G01510 73.7 1.9e-204 708.8
Hepe08g0587 . 10 210 Protein tyrosine phosphatase (PTP) family AT2G32960 59.7 7.0e-74 274.2
Hepe02g0073 . 6 233 Protein tyrosine phosphatase (PTP) family AT2G32960 59.6 3.0e-72 268.9
Hepe09g1309 . 14 170 Protein tyrosine phosphatase (PTP) family AT2G32960 50.8 4.4e-52 201.8
Hepe06g1113 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 56.3 6.1e-102 367.9
Hepe08g2635 . 10 229 Protein tyrosine phosphatase (PTP) family AT2G35680 60.1 1.9e-79 293.1
Hepe08g2635 . 27 216 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 7.7e-46 180.6
Hepe08g0587 . 43 211 Protein tyrosine phosphatase (PTP) family AT4G03960 76.9 3.4e-76 281.6
Hepe02g0073 . 36 234 Protein tyrosine phosphatase (PTP) family AT4G03960 63.3 1.1e-69 260.0
Hepe09g1309 . 12 170 Protein tyrosine phosphatase (PTP) family AT4G03960 59.7 6.7e-56 214.2
Hepe09g1309 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 69.0 7.5e-79 290.4
Hepe08g0587 . 40 206 Protein tyrosine phosphatase (PTP) family AT3G02800 59.9 7.5e-55 210.7
Hepe01g0838 . 1 184 Protein tyrosine phosphatase (PTP) family AT3G55270 66.0 2.2e-62 237.7
Hepe02g2078 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 64.2 1.3e-151 533.1
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G19420 63.4 1.4e-216 749.6
Hepe04g1268 . 31 601 Protein tyrosine phosphatase (PTP) family AT3G19420 61.7 5.7e-199 691.0
Hepe04g1268 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 61.6 1.7e-190 662.9
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.5e-178 623.2
Hepe09g0582 . 1 1206 Protein tyrosine phosphatase (PTP) family AT5G58160 54.1 5.5e-313 1070.8
Hepe08g1059 . 56 321 Protein tyrosine phosphatase (PTP) family AT5G58160 64.6 1.9e-92 338.2
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 67.5 0.0e+00 1165.6
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.8 0.0e+00 1112.8
Hepe08g0239 . 62 244 Protein tyrosine phosphatase (PTP) family AT3G44620 65.2 1.7e-67 253.1
Hepe06g1037 . 23 319 Protein tyrosine phosphatase (PTP) family AT2G35320 61.3 2.3e-108 389.0
Hepe04g0778 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 69.0 6.1e-279 956.8
Hepe04g0778 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.8 1.1e-253 872.8
Hepe04g0778 . 86 672 Protein tyrosine phosphatase (PTP) family AT5G28210 55.5 1.4e-181 633.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011691 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 0 2 1 1 30