Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0276 ATGGCCGGCATTGTCAAGGAGATCCTGGCAAGGCCCATCCAACTCGCCGACCAGGTCACCAAAAATGCCGATTTCGCCCAAACCTTCAAACAAGAATGCATCGAACTCAAAACCAAAACCGAAAAACTCGCCGCCCTTCTCCGGCAAGCCGCCCGTGCCAGCAACGACCTCTACGAACGCCCCACTCGCCGGATCATCGACGACACCGAACAAGTCCTCGACAAAGCCCTCACTCTTGTCATGAAATGCCGCGCCAATGGCATCGTGAAACGGATGTTCACCATCATCCCTGCCGCCGCCTTCAAAAAAACCTCCACCCAACTCGAAAACTCCATCGGCGACGTCTCTTGGCTCCTCCGCGTCTCCGCCCCCGCCGAGGATCGCGACGACGAGTACCTCGGCCTCCCTCCCATCGCCTCCAACGAACCAATCCTAGGTCTAATTTGGGAACAGGTTGCGATTCTCCACACCGGAGCTTTAGAAGAACGATCCGACGCCGCTGCCTCCCTCGCATCCTTAGCTCGTGACAACGATCGGTACGGGAAACTAATCATCGAAGAAGGTGGCGTCGGGCCGCTGCTGAAATTGGCGAAAGAAGGTCGAATGGAAGGGCAAGAACACGCGGCTAGGGCAATTGGGCTCTTAGGTCGAGATTCCGAAAGCGTGGAACAGATTGTGAATTGCGGCGTGTGCTCGGTGTTCGCGAAGATTCTGAAAGATGGGCATATGAAAGTTCAATCCGTGGTAGCTTGGGCAGTTTCAGAAATGGCGACCCACCATCCGAAATGCCAAGATCATTTTGCTCAGAACAATGTGATTCGGCTTCTGGTTAGCCATGTGGCATTCGAAACCATCCAAGAACACAGTAGGTACACGATTGCTACCAAACAACAAATGTCGATTCATTCGGTGCTGTTAGCTAATAGTAATGGATCTTCTGATCAAATTGTCAAAAATGGTTTTGAAGAAGATGATAAACAAATTGATGTAAATCATCCAACTGGGAATCAATTGTCTAGCCAAATGCATAATGTAGTTGCCAACACAATGGCTATGAAGACTCCCAATACAGGTCAGTCATCAAATCCACAGGAAGTGCATAATAATCCTCAGAAGGGTACGGCGACAATGGGGCGAGCGCACGCAGCGTTGTCCGGTGCAAGCATAAAGGGAAGAGAATATGAAGACCCTGCAACAAAGGTCCAAATGAAAGCCATGGCGGCTCGAGCTCTATGGCATCTATGCAAAGGGAATGTCACCATTTGCCGCAACATCACAGAGTCGAGAGCTCTGCTGTGCTTTGCTGTTCTATTAGAGAAGGGTCCGGAAGATGTCAAGTACTACTCCGCCATGGCGTTGATGGAAATCACCGGCGTGGCGGAGCAGAATGCGGAGCTGCGTCGATCCGGGTTCAAGCCGACTTCGCCCGCCGCAAAGGCAGTGGTGGAACAGTTGTTGAAGATCGTGGAGAAGGCGAATTGTGACCTGCTTGTGCCTTCGATTAGAGCGATTGGTCACTTGGCTAGGACGTTTAGGGCGACGGAGACGAGGATGATCGGGCCGCTGGTGAAGCTGCTGGACGAAAGGGAAGCAGACGTTTCGATGGAGGCGGTGATTGCGCTTAACAACTTTGCATGTCCGGACAACTTCCTACATGACAACCATTGCAAAGCGATCATAGAAGCAGGGGGGACAAAGCACTTAATTCAACTAGTGTATTTTGGAGAACAGATGGTTCAAATTCCTTCATTGATTCTTCTGTGCCATATAGCATTACATGTTCCTGATAGTGAAGTGCTTGCTCAAGAAGAAGTACTTATAGTGCTGGAATGGTCTTCTAAACAAGCTCACTTAATTGAAGAACCACACATAGAAAGGATACTTCCAGAAGCCAAAAGTAGATTGGAACTTTATCAGTCCAGAGGTTCAAGAGGATTTCATTGA 1944 50.05 MAGIVKEILARPIQLADQVTKNADFAQTFKQECIELKTKTEKLAALLRQAARASNDLYERPTRRIIDDTEQVLDKALTLVMKCRANGIVKRMFTIIPAAAFKKTSTQLENSIGDVSWLLRVSAPAEDRDDEYLGLPPIASNEPILGLIWEQVAILHTGALEERSDAAASLASLARDNDRYGKLIIEEGGVGPLLKLAKEGRMEGQEHAARAIGLLGRDSESVEQIVNCGVCSVFAKILKDGHMKVQSVVAWAVSEMATHHPKCQDHFAQNNVIRLLVSHVAFETIQEHSRYTIATKQQMSIHSVLLANSNGSSDQIVKNGFEEDDKQIDVNHPTGNQLSSQMHNVVANTMAMKTPNTGQSSNPQEVHNNPQKGTATMGRAHAALSGASIKGREYEDPATKVQMKAMAARALWHLCKGNVTICRNITESRALLCFAVLLEKGPEDVKYYSAMALMEITGVAEQNAELRRSGFKPTSPAAKAVVEQLLKIVEKANCDLLVPSIRAIGHLARTFRATETRMIGPLVKLLDEREADVSMEAVIALNNFACPDNFLHDNHCKAIIEAGGTKHLIQLVYFGEQMVQIPSLILLCHIALHVPDSEVLAQEEVLIVLEWSSKQAHLIEEPHIERILPEAKSRLELYQSRGSRGFH 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2496954 2498897 + Hsped.08g02760.1 Hepe08g0276 576248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0276 647 MobiDBLite consensus disorder prediction 355 375 - -
Hepe08g0276 647 SMART arm_5 474 509 IPR000225 GO:0005515(InterPro)
Hepe08g0276 647 SMART arm_5 218 258 IPR000225 GO:0005515(InterPro)
Hepe08g0276 647 SMART arm_5 418 458 IPR000225 GO:0005515(InterPro)
Hepe08g0276 647 SMART arm_5 176 217 IPR000225 GO:0005515(InterPro)
Hepe08g0276 647 SMART arm_5 552 592 IPR000225 GO:0005515(InterPro)
Hepe08g0276 647 Pfam Armadillo/beta-catenin-like repeat 219 257 IPR000225 GO:0005515(InterPro)
Hepe08g0276 647 PANTHER ARMADILLO REPEAT ONLY 4 1 644 - -
Hepe08g0276 647 Coils Coil 36 56 - -
Hepe08g0276 647 FunFam Armadillo repeat only 4 2 121 - -
Hepe08g0276 647 Gene3D - 150 325 IPR011989 -
Hepe08g0276 647 MobiDBLite consensus disorder prediction 355 381 - -
Hepe08g0276 647 FunFam Armadillo repeat only 2 150 319 - -
Hepe08g0276 647 Gene3D - 4 121 IPR036537 GO:0007166(InterPro)
Hepe08g0276 647 SUPERFAMILY ARM repeat 153 606 IPR016024 -
Hepe08g0276 647 FunFam Armadillo repeat only 2 381 635 - -
Hepe08g0276 647 Gene3D - 383 621 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0276 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1596 Hepe-Chr4:71444173 Hepe08g0276 Hepe-Chr8:2496954 1.25e-284 dispersed
Hepe07g2202 Hepe-Chr7:66405723 Hepe08g0276 Hepe-Chr8:2496954 6.90e-100 dispersed
Hepe08g0276 Hepe-Chr8:2496954 HepeContig66g0032 Hepe-ChrContig66:3914580 1.40e-21 dispersed
Hepe08g0276 Hepe-Chr8:2496954 Hepe10g0042 Hepe-Chr10:365476 9.04e-118 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g134 . . . . . . . . . . Cma02g00321 . Car02g00202 Car20g00666 . . . . . . . . . . . . . . . . . . . . . Lsi10g00476 . Chy11g00278 . . . . . . . . . Sed01g0209 Cmo02g00315 . . . . . Cpe16g00305 Cpe05g01320 Bhi10g01872 Tan05g1164 Cmetu11g2261 . Hepe08g0276 . . Cla02g01149 Cam02g1226 Cec02g1233 Cco02g1275 Clacu02g1206 Cmu02g1175 Cre02g1484 . Csa02g01370 . Cme11g00398
Vvi4g1117 . . . . . . . Bma15g00941 . . Cma03g00681 Cma07g00424 Car03g00628 Car07g00371 Sed14g1200 Cpe19g00863 Cpe10g00667 Bhi03g00862 Tan03g2088 Cmetu04g1901 . Hepe04g1596 . . Cla01g01984 Cam01g2077 Cec04g1736 Cco04g1802 Clacu01g2099 Cmu01g1974 Cre04g1650 . . Cone6ag1684 Cone9ag1606 Lsi01g00597 . . Cme08g00933 Blo05g00710 Blo06g00299 . . Bpe10g00158 Bpe06g00129 . . Sed01g0209 Cmo03g00706 Cmo07g00421 . . . . . . Bhi10g01872 Tan05g1164 Cmetu11g2261 . Hepe08g0276 . . . . . . . . . . Csa06g03331 Chy02g00569 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008024 0 1 2 1 2 1 3 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36