Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0290 ATGGAAACTCGGAGCAGAAAGCGGGCGGAGGCCTCCTCAGCAGCCCCTTCTTCTTCGTCTTCTGGTCCTGCTACCCGTTCTAACAAACGCGCTCGTCTCTCTGCTACTTCCTCTTCGAATCTTGCTGCATCCACTCCTTCGATCTCTACCCGTTCTCGCTTAACTCGAACCCAAGAACCTTCTGCTGCCACCAGTACTCCAATGGACTCGACCAATGAATCCTCCGGCTCACGCCGACGTGGGAAGAACTCTGATAAAGAAAACTCCGATAAGGGGAAGGAGAAAGAACATGAGGTTAGAATAGGGGATAGAGAAAGAATTGCGGAGCAGAGCTTTGGGCTCAATATTGAAGCCAGTGGCGGTGGAGAGGATGATGATAACGACAGTGAAGGGGGAATGGGAGTCTTGCAGCAGAATTTATCCACTGCAAGTAGCGCCCTTCAAGGACTTCTAAGGAAACTCGGTGCTGGACTGGATGATTTACTTCCGTCTTCTGCAATTGCATCGGCTTCATCTTCACAGCAGAGAGGCCGGCTTAAGAAGATCTTATCTGGGTTGAGAGCGGATGGAGAAGAAGGGAAGCAGGTTGAGGCATTGACACAACTTTGTGAGATGCTCTCAATCGGCACCGAGGAATCTCTAAGTACTTTTTCTGTGGATTCCTTTGTCCCTGTCCTCGTCGGGTTACTTAATCACGAAAGTAATCCTGATATCATGCTTCTAGCGGCCAGGGCATTGACCCATCTGTGTGATGTCCTACCCTCATCCTGTGCGGCTGTCGTGCATTATGGTGCTGTTTCCTGCTTCTGTGCGAGATTGCTGACTATAGAATACATGGACTTAGCTGAACAGTCCCTGCAAGCTTTAAAGAAGATATCCCAGGAACATCCTACCGCCTGCCTGCGTGCTGGTGCTCTTATGGCTGTGCTTTCATATTTGGATTTCTTCTCCACAGGAGTTCAGCGAGTCGCATTGTCAACTGCTGCTAATATGTGCAAGAAGCTTCCTTCAGATGCAGCCGACTTTGTGATGGAAGCTGTTCCCCTGCTGACAAACCTTCTTCAGTATCATGATGCAAAGGTGTTGGAGCATGCTTCAGTTTGTTTGACTCGTATTGCCGAGGCCTTTGCATCATCTCCTGACAAATTAGATGAACTATGTAATCATGGACTTGTTACGCAAGCTGCCTCACTTATTTCCACTAGTAGTACCGGAGGTGGACAGTCAACTCTCAGCTCAGCTACTTACACTGGATTAATCCGACTTCTATCCACATGTGCAAGTGGGTCTGCATTAGGTTCAAAAACTTTGCTGCTTCTTGGGATCAGTGGGATTCTTAAAGATATATTGTCTGGTTCTGGTGTGTCTACTAATGCATCTGTTTCGCCGGCATTAAATAGACCACAAGAGCAGATTTTTGAGATAGTCAACTTGGCAAATGAGCTTCTACCCCCTCTACCTCAAGGTACCATTTCCTTTCCGCCCAACTTTAATTCATTTGTGAAAGGACCTGTCATCAAGAAGCCTTCTACTAGTGGTTCTGTGAAAGAAGAAGATCCATCTGATAGTGCTCCAGAGGTTTCAGCTCGTGAGAAACTCTTAAAGGATCAGCCTGAGCTCCTCCACCAGTTTGGAATGGATATCCTTCCTATTTTAATACAGATCTATGGTTCCAGTGTGAATGGTCCAGTACGTCATAAATGTCTCTCAGGAATTGGAAAATTGATGTACTTCAGCACTCCAGAGATGATACAATCATTATTGAATGTGACTAATATAGCAAGTTTCTTAGCTGGTGTTTTGGCATGGAAAGATCCACACATATTGATTCCTGCTCTCCAAATTGCTGAGATTCTTATGGAAAAGCTTCCTGAAACATTTTCCAAGATGTTCCTTCGAGAGGGTGTTGTTTATGCTGTTGACCAGCTTATCTTAGCTAATAACCAAAATACTGCTTCCCAAGCCGCTTCTGTTGAGAAGGATAATAGCCCTGCATCTGGAACTTCATCACGCGCTCGACGTTATAGACGGCGGAGTGGAAATATGAATCCGGATGGAAGTTCACTGGACGAAAACAAGAACCCTGTTTCTGGAAGTGGTGTGCCACAGGGTTCAGTGGAAGCTCCATCAATTAATTCTAATCTCCGAACTGCTGTGAGTGCCTGTGCCAATGCTTTTAAAACTAAGTACTTCCCTTTAGATCCAGGGGACGTTGAAGTTGGAGTTACGGATGATCTCTTACGTTTGAAGAATCTTTGTGTCAAGTTGAATGCTGGCATTGATGATCAGAAGACTAAATCGAAAGGAAAGTCAAAAGCTTCAGGGTCCCGCCTAGATGATATTATTACAAATAAGGAAGAGTATTTAACTGGCGTAATATCTGAAATGCTAATTGAATTGGGAAAAGATGACGGTGTTTCCACTTTTGAATTTATTGGTAGTGGCGTTGTTGGAGTTCTGCTTAACTACTTTTCGTGTGGATACTTTTCTAAAGGAAGAATTTCAGAAGCTGAGTTGCCGAAGCTTCGTCAACAAGTACTTAAAAGATTTAAATCATTTATTTCTGTTTCCCTTTCTACAAGCATTAATGAGGGGACAGTAAATCCTATGACAGTCTTAGTTCAAAAGCTACAGAGTGCTTTATCCTCGTTGGAGCGTTTTCCCGTTGTCCTGAGCCATTCTTCTAGATCATCCAATGGTGGTGCACGCCTTTCCTCTGGGCTAAGTGTATTATCTCAGCCATTTAAGTTACGACTTTGTCGAGCCCAAGGAGAAAAATCACTTCGTGATTATTCATCAAATATTGTTCTGATTGATCCATTGGCAAGTTTAGCAGCTGTTGAAGAATTTCTGTGGCCTAGAGTTCAGAAAAGTGAATCTGGTCAGAAACCTTCAGCATCTGGTGCGAACTCAGATTCAGGAACAACACCTCCAGGAACCGTTGCTCCATCAGGGTTAAATTCGACTCCCAGTTCAACCACTCGCCGTTACTCTACTAGGTCTAGATCATCAATGACTATTGGAGAAAGAGCAGGGAAGGAATCTTCACAGGAGAAAAGCACTTCAAAGGGGAAGGGTAAAGCTATTCTAAAGCCTGCTTGGGAGGAGAAGAGAGGCCTACAAACTAGAAGTTCTACTCGTAGAAGAGCAGCTGTGGACAAGGATGCCCAAATGAAGCCTGCAAATGGAGAGACCACTTCTGAGGATGAAGAATTGGACCTATCCTCCATCCAGATTGATGATTCTTTAGTGATTGAGGATGATGATATTTCTGATGATGAAGATGATGACCACGATGATGTGCTGCAGGATGACTCTCTTCCTCTTTGTATGCCTGAAAAGGTGCATGATGTCAAATTGGGTGACGCAGTCGAAGATGCTGATGCTGGTCCAGCTACAAGTGATAGCCAAATTCATTCAACTTTTGGCTCTAGCAGTAGAGCTGCTACAGTCAGAGGTTCTAATTCTCCTGATCATAGGAGTGGAAATTCTTATAGTTCAAGGGCAGGTATGTCATTTGCTGCTGCTGCTATGGCTGGGCTTGGACCAGCTAATGGCAGAGCTTTCCGTGGAGGTCGGGATCCACAGGGACGTCCTATCTTTGGTGGCTCCAATGATAACCCTAAATTAGTCTTTTCTTCTGGTGAGAAGCAGCTTGATAGGCATTTGACAATATACCAAGCTGTTCAACGGCAGCTCGTTTTGAATGAGGATGACGACGAGAGGTTTGCTGGTGCTGGCAGTGATTTCTTATCTAATGATGGGAGCAGTTTATGGGGTGATATATACACTATCACATATCAGAGGGCAGATAATCAATCTGAAAGAGCTTTAGCCGGGGAGTCAAGCTCCTCTAAATCTAAATCTACTAAATGTGTATCGACTTCCAGTTCAAATTCAGAGTCTCAGTTCCATCAAATGTCACTTTTAGATAGTATTTTACAAGGAAAAATTCCATGTGATTTGGACAAATCTAATCCTACATATGAACTACTATCTTTACTGCGTGTACTTGAGGGTTTGAACCAGCTTGCTCCACGCTTGAGGGCACAGATAGTGTCGGATCATTTTGCTGAGGGAAAGATCACTACGCTTGATGAGTTGAGTGGAATTGGTGGAAAGGTTCCTCATGAGGAATTTCTAAACAGTAAGCTTACTCCCAAATTGGCTCGACAAATTCAGGATGCTCTTGCACTATGCAGTGGGAGTCTTCCCTCGTGGTGTTACCAATTGACTAAGGCTTGTCCTTTCTTGTTTCCTTTTGATACCCGGCGACAATATTTCTATTCAACTGCATTTGGGCTGTCACGTGCATTATATAGGCTACATCAGCAACAAGGGGCTGATGGTCTTGGAACAGTAAATGAACGAGAGGGAAGGGTTGGAAGATTGCAGCGCCAAAAAGTTCGTGTCTCCCGTAATCGTATATTGGATTCTGCTGCAAAAGTTATGGAAATGTATTCTAGCCAGAAGGCCGTTCTTGAAGTAGAATATTTTGGTGAGGTGGGAACTGGACTAGGTCCTACCCTTGAATTCTACACACTTTTAAGTCATGAATTGCAGAGGGCTGGACTTGGGATGTGGAGATCTAATTCCTTACAAGAGTCGATAGAAAGTGGTGAAGATGGGGAGCTTAGGAAGGCAAAAGGGGACGGATCCCGTTTGTCTGCAATAGTTTTGGTGGTGAAAGGCGGCCGCCGTCAGAGAGCAGTTCTTTTTGTTCCTTTTATCCTTCCTTCTGGAGTTGTGTACATTCATATTTTAACCATTCTGCTCATCCTGTACTCATCTGTTTATTTGGTTGCTCTCTTTCTTAGAGCAATGGTATTACAGTCTGGTTAA 4842 44.32 METRSRKRAEASSAAPSSSSSGPATRSNKRARLSATSSSNLAASTPSISTRSRLTRTQEPSAATSTPMDSTNESSGSRRRGKNSDKENSDKGKEKEHEVRIGDRERIAEQSFGLNIEASGGGEDDDNDSEGGMGVLQQNLSTASSALQGLLRKLGAGLDDLLPSSAIASASSSQQRGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSTGGGQSTLSSATYTGLIRLLSTCASGSALGSKTLLLLGISGILKDILSGSGVSTNASVSPALNRPQEQIFEIVNLANELLPPLPQGTISFPPNFNSFVKGPVIKKPSTSGSVKEEDPSDSAPEVSAREKLLKDQPELLHQFGMDILPILIQIYGSSVNGPVRHKCLSGIGKLMYFSTPEMIQSLLNVTNIASFLAGVLAWKDPHILIPALQIAEILMEKLPETFSKMFLREGVVYAVDQLILANNQNTASQAASVEKDNSPASGTSSRARRYRRRSGNMNPDGSSLDENKNPVSGSGVPQGSVEAPSINSNLRTAVSACANAFKTKYFPLDPGDVEVGVTDDLLRLKNLCVKLNAGIDDQKTKSKGKSKASGSRLDDIITNKEEYLTGVISEMLIELGKDDGVSTFEFIGSGVVGVLLNYFSCGYFSKGRISEAELPKLRQQVLKRFKSFISVSLSTSINEGTVNPMTVLVQKLQSALSSLERFPVVLSHSSRSSNGGARLSSGLSVLSQPFKLRLCRAQGEKSLRDYSSNIVLIDPLASLAAVEEFLWPRVQKSESGQKPSASGANSDSGTTPPGTVAPSGLNSTPSSTTRRYSTRSRSSMTIGERAGKESSQEKSTSKGKGKAILKPAWEEKRGLQTRSSTRRRAAVDKDAQMKPANGETTSEDEELDLSSIQIDDSLVIEDDDISDDEDDDHDDVLQDDSLPLCMPEKVHDVKLGDAVEDADAGPATSDSQIHSTFGSSSRAATVRGSNSPDHRSGNSYSSRAGMSFAAAAMAGLGPANGRAFRGGRDPQGRPIFGGSNDNPKLVFSSGEKQLDRHLTIYQAVQRQLVLNEDDDERFAGAGSDFLSNDGSSLWGDIYTITYQRADNQSERALAGESSSSKSKSTKCVSTSSSNSESQFHQMSLLDSILQGKIPCDLDKSNPTYELLSLLRVLEGLNQLAPRLRAQIVSDHFAEGKITTLDELSGIGGKVPHEEFLNSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFDTRRQYFYSTAFGLSRALYRLHQQQGADGLGTVNEREGRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHELQRAGLGMWRSNSLQESIESGEDGELRKAKGDGSRLSAIVLVVKGGRRQRAVLFVPFILPSGVVYIHILTILLILYSSVYLVALFLRAMVLQSG 1613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2627081 2642972 + Hsped.08g02900.1 Hepe08g0290 576262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0290 1613 SUPERFAMILY Hect, E3 ligase catalytic domain 1459 1534 IPR035983 GO:0004842(InterPro)
Hepe08g0290 1613 MobiDBLite consensus disorder prediction 654 709 - -
Hepe08g0290 1613 MobiDBLite consensus disorder prediction 1067 1099 - -
Hepe08g0290 1613 SUPERFAMILY ARM repeat 179 657 IPR016024 -
Hepe08g0290 1613 Gene3D - 530 660 IPR011989 -
Hepe08g0290 1613 Gene3D Hect, E3 ligase catalytic domains 1407 1545 - -
Hepe08g0290 1613 MobiDBLite consensus disorder prediction 1133 1167 - -
Hepe08g0290 1613 SMART arm_5 210 251 IPR000225 GO:0005515(InterPro)
Hepe08g0290 1613 SMART arm_5 336 374 IPR000225 GO:0005515(InterPro)
Hepe08g0290 1613 SMART arm_5 293 333 IPR000225 GO:0005515(InterPro)
Hepe08g0290 1613 MobiDBLite consensus disorder prediction 1 135 - -
Hepe08g0290 1613 MobiDBLite consensus disorder prediction 681 709 - -
Hepe08g0290 1613 FunFam HECT ubiquitin protein ligase family protein KAK 172 486 - -
Hepe08g0290 1613 MobiDBLite consensus disorder prediction 654 670 - -
Hepe08g0290 1613 MobiDBLite consensus disorder prediction 1012 1055 - -
Hepe08g0290 1613 MobiDBLite consensus disorder prediction 75 107 - -
Hepe08g0290 1613 MobiDBLite consensus disorder prediction 958 1011 - -
Hepe08g0290 1613 MobiDBLite consensus disorder prediction 512 528 - -
Hepe08g0290 1613 MobiDBLite consensus disorder prediction 509 528 - -
Hepe08g0290 1613 Gene3D - 167 486 IPR011989 -
Hepe08g0290 1613 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 136 1535 IPR045322 GO:0000209(PANTHER)|GO:0006511(InterPro)|GO:0043161(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)
Hepe08g0290 1613 MobiDBLite consensus disorder prediction 958 1099 - -
Hepe08g0290 1613 MobiDBLite consensus disorder prediction 10 74 - -
Hepe08g0290 1613 MobiDBLite consensus disorder prediction 1126 1167 - -
Hepe08g0290 1613 MobiDBLite consensus disorder prediction 1276 1299 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0290 K10590 - - csv:101218793 2632.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0233 Hepe-Chr5:2752766 Hepe08g0290 Hepe-Chr8:2627081 1.00e-170 transposed
Hepe02g0428 Hepe-Chr2:4116381 Hepe08g0290 Hepe-Chr8:2627081 0.0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g154 . . . . . Bpe12g00120 . . . . Cma02g00257 Cma20g00754 . Car20g00655 . . . . . . . . . . . . . . . . . . . . Cone10ag1234 . . Chy11g00258 . Blo04g00566 Blo13g00505 Bda15g01035 . Bpe15g00815 . Bma03g00607 Bma08g00752 Sed01g0197 Cmo02g00253 Cmo20g00750 . . . . Cpe16g00315 Cpe05g01375 Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . Cla02g01165 Cam02g1242 Cec02g1251 Cco02g1292 Clacu02g1224 Cmu02g1192 Cre02g1504 . Csa02g01389 . Cme11g00383
Vvi4g1154 . . . . . . . . . Cmo20g01136 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g0197 . . . Cma20g01106 . . Cpe05g01103 . Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48