Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0300 ATGTCTGCCAAGGAAGTGATTGCAGAGGAGCAGAGTGAGCAAGTGAAGGATTATGTGGATCCACCACCAGCTCCATTCATGGGCTTCTCTGAGTTGAAGCAATGGTCTTTTTACAGAGCTGTTATTGCTGAATTCATGGCTACTCTACTTTTCCTCTACATCACCATTGCCACCCTCGTTGGAAACAATGCACAAACAGGGCCCTGTTCTGGTGTTGGCCTCCTCGGCATCGCATGGGCCTTCGGTGCCATGATCTTCGTCCTTGTTTACTGCACCGCCGGTATCTCAGGTGGGCATATCAACCCTGCCGTCACGTTCGGGCTGCTGTTGGCAAGAAGGGTGTCGTTGATCCGCGCGGTGGCTTACATGGCAGCACAGTGTCTGGGAGCCATTGCCGGCGTTGCATTGGTTAAAGGTTTCATGAGGCACGCCTACAACAGCAACGGCGGCGGAGCCAACCTTGTTGCTCCCGGGTTCAGCAAAGGCACCGCCCTTGCCGCCGAGATCATCGGCACTTTTCTGCTGGTCTACACCGTCTTCTCAGCCACCGACCCTAAAAGAAACGCCCGCGACTCCCATATTCCTGTTTTGGCTCCATTGCCCATCGGATTGGCTGTGTTTGTTGTGCATCTAGCCACCATTCCGATTACCGGCACAGGCATCAACCCTGCTCGGAGCTTTGGCGCCGCCGTGATGTTCAACAACAGAAGAGTGTGGAGCCACCATTGGATATTCTGGATTGGGCCATTTGTTGGGGCGTCGGCAGCGGCGGTGTACCATCAATACGTTCTCAGAGCGGCGGCCGTCAAGGCGCTTGGATCCTTCCGTAGCAACCGCTAG 840 55.12 MSAKEVIAEEQSEQVKDYVDPPPAPFMGFSELKQWSFYRAVIAEFMATLLFLYITIATLVGNNAQTGPCSGVGLLGIAWAFGAMIFVLVYCTAGISGGHINPAVTFGLLLARRVSLIRAVAYMAAQCLGAIAGVALVKGFMRHAYNSNGGGANLVAPGFSKGTALAAEIIGTFLLVYTVFSATDPKRNARDSHIPVLAPLPIGLAVFVVHLATIPITGTGINPARSFGAAVMFNNRRVWSHHWIFWIGPFVGASAAAVYHQYVLRAAAVKALGSFRSNR 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2705016 2707321 + Hsped.08g03000.1 Hepe08g0300 576272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0300 279 FunFam Probable aquaporin PIP1-2 24 279 - -
Hepe08g0300 279 Gene3D Glycerol uptake facilitator protein. 24 279 IPR023271 -
Hepe08g0300 279 PRINTS Major intrinsic protein family signature 118 137 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe08g0300 279 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe08g0300 279 PRINTS Major intrinsic protein family signature 243 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe08g0300 279 PRINTS Major intrinsic protein family signature 203 225 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe08g0300 279 PRINTS Major intrinsic protein family signature 81 105 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe08g0300 279 PRINTS Major intrinsic protein family signature 167 185 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe08g0300 279 SUPERFAMILY Aquaporin-like 31 265 IPR023271 -
Hepe08g0300 279 CDD MIP 39 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe08g0300 279 NCBIfam MIP family channel protein 43 259 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe08g0300 279 Pfam Major intrinsic protein 31 260 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe08g0300 279 ProSitePatterns MIP family signature. 99 107 IPR022357 -
Hepe08g0300 279 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 9 277 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0256 Hepe-Chr5:3034094 Hepe08g0300 Hepe-Chr8:2705016 3.21e-136 dispersed
Hepe08g0300 Hepe-Chr8:2705016 Hepe08g0886 Hepe-Chr8:8024237 1.14e-141 dispersed
Hepe02g0419 Hepe-Chr2:3998850 Hepe08g0300 Hepe-Chr8:2705016 2.09e-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0300 K09872 - mdm:103444918 454.907