Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0320 ATGGATTTCTCTCTCAAATCTTTCAAGTATGCGAACAAACTTTCTGCAAAAGACTCTACTCAACATCAAGAACACCTCCCGATTCTCTCAGATCAGGAGCAACAATCCTCGATTATGGCCGTCTCCGATGCGTTATCTGACCGGAGAGAGGTCGTCGTCAAGGTCGATCAGCCCAATGCTGAGTCCGTGAACAGCAGTGGGGGGATTTGGCGGGAGTCGAGCTATGATTTCTGGAATGATAGTGATTGTAGGCGGAATCATGATCAGAATAATGGTGGTGGTAAGAGTGAGGATTTTGAGTTTAGGCAACTCCGGAAGGATGTGAAGGATGTGGAAGATCCGCCTTCCAAGCTCATTGGACAGTTTCTGCACAAGCAGAAGGCCTCGGGAGAGATGTCTTTGGATATGGATATGGAAATGTTGGAAGTGGAACTACCACAAGATAAGACTCTGCCTGCGGTGGCGGAATCTCCGATGCGACGGAGCTCGACGGAGTTGAAGGTCGCTTTCCAGTCCATTTCGGAGATTTCTGAAAACGATTCTATGCGAAGACGGCATAGGGACTCGCCGCCGGTCGATGAAGAATATAGAGGACAGCAAACGCACCACCGTGATCGTCGAGCTTATGGAAATAGTCACGATGGTGATGGTGATGGTGAGGTTGTGAGATGCACATCTAATTCGTCGTTTCAGAGGAAATCTAGCTTGCTTGGTGGGGCTAAACCTAAGTCCAGATTGCTTGGCCCTCTTGAACAGCCGGACCGGAGGTCAGGTCGTGTACCAAAATCAGGGCAAATGCGCTCGGGGTTGTTGTCAAAAGTCTTGGATGAAGAAGATGATGATCCATTCTTGGAAGAAGATCTTCCAGATGAGTACAAGAAGGCCAATCTTGGTGTTCTTACTCTGTTACAATGGGCGAGTTTGATTTTGATAATCGCGGCATTGATTTGCAGTTTGACGATTCGTTACTGGAGGGGAATGAAACTATGGAAGCTCGAGTTATGGAAATGGGAGGTAATGATTCTAGTTCTGATATGTGGAAGGTTGGTTTCTGGATGGGGGATTAGGATAATCGTCTTCTTCATCGAGAGAAGCTTTCTACTGCGTAAGAGAGTTCTCTACTTTGTCTATGGAGTTAGAAAGGCAGTTCAAAATTGTCTTTGGTTGGGACTTGTTTTAATTGCTTGGAACTTTCTGTTTGATGACAAAGTTCAAAGAGAAGTCAAGAGCAATGTCCTCGAGTATGTGACCAAAGTACTTGTATGCCTTTTAGTAAGCACTTTGGTTTGGCTTGTGAAAACTCTGATGGTGAAGGTTTTAGCTTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAGGATGCACTGTTTAACCAATATGTAATTGAGACACTATCAGGACCGCCATTGATAGAGATTCAAAAGAATGAGGAAGAAGAAGAGAGACTTGCAGAAGAGGTAATGAAGTTACAAAATGCAGGGGCCACCATTCCTCCTGATCTAAAGGCAACTGCCTTTCCAACTCCAAAGGGTGGGGGAAGGGTGATTGGGAGTGGAGGGCTGCAGAAGAGTCCTCGTGGAAGAAGCGCCAAACTATCTCGGGCGCTATCGAAAAATGGCGAGGAGGGTATAACCATTGATCACTTGCATAAGCTTAGTCCTAAGAATGTGTCCGCTTGGAATATGAAGAGGTTGATGAACATGGTTCGACATGGAGTTCTTTCAACTTTGGATGAACGGATCAAGGATTCAACTCATGAGGATGAATCAGCCACACAGATCAAGAGTGAATATGAGGCAAAACTTGCTGCTAAGAAGATTTTTGAGAACGTGGCTAGGCATGGTTCCAAATACATCTACCTAGAGGACTTGATGCGTTTCGTGGCAGAAGATGAAGCTTCAAAAACCATGAGTCTTTTTGAAGGAGCATCTGAGAGCAGGAAAATAAGCAAATCATCCTTGAAAAACTGGGTGGTCAATGTCTTTAGAGAACGGAGGGCCCTAGCTTTGACACTGAATGATACGAAAACAGCTGTGAACCAACTTCACCGCATGGTGAATATTTTAGTTTCTGTTGTTATATTGGTTATTTGGCTACTGATTCTGGGTATAGCCACCAGCAAGTTTCTGTTATTTGTAACTTCTCAACTCTTCCTAGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTTTTTGAAGCAATCATCTTCTTATTTGTGATGCATCCATTCGATGTTGGCGACCGATGTGAAATCGAGGGCGTGCAGATGATCGTAGAAGAAATGAATATTATGACGACCCTTTTTCTAAGATATGACAGCCAGAAAATCATAATTCCAAACAGTATTCTCGCAACCAAGGCCATCCAGAACTACTACCGCAGTCCCGACATGGGCGACGCCATAGAATTCTGTCTTCACATATCTACTCCGCCTGAGAAAATTGCTGTTATAAAACAGAGAATAGTAAGTTACATTGAGGGCAAGAACGAGCACTGGTATCCTGCTCCAAAAATTGTCATCAAGGATGTAGAAGAGTTGAATAGGATGAGATTAGCCATATGGCCTACTCATCGAATGAACCATCAAGACATGGGAGAGAGGTGGGCAAGGAGATCCCTTTTGGTCGAAGAACTGGTTAAAATTTTGCAAGAGCTCGACCTTCAACACCGTCTCCTACCGCTCGATATCAATGTTCGTTCCTTGCCTCCGGTGACCTCTACCAGGTTTCCAGCTACTTGGACAGCCACTGCATCGAGTGAGGCAGACAAGGAAATCAACCAATCGATGGATGGTACTCGCGGTTTGTAG 2814 44.63 MDFSLKSFKYANKLSAKDSTQHQEHLPILSDQEQQSSIMAVSDALSDRREVVVKVDQPNAESVNSSGGIWRESSYDFWNDSDCRRNHDQNNGGGKSEDFEFRQLRKDVKDVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLEVELPQDKTLPAVAESPMRRSSTELKVAFQSISEISENDSMRRRHRDSPPVDEEYRGQQTHHRDRRAYGNSHDGDGDGEVVRCTSNSSFQRKSSLLGGAKPKSRLLGPLEQPDRRSGRVPKSGQMRSGLLSKVLDEEDDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALICSLTIRYWRGMKLWKLELWKWEVMILVLICGRLVSGWGIRIIVFFIERSFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSNVLEYVTKVLVCLLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEERLAEEVMKLQNAGATIPPDLKATAFPTPKGGGRVIGSGGLQKSPRGRSAKLSRALSKNGEEGITIDHLHKLSPKNVSAWNMKRLMNMVRHGVLSTLDERIKDSTHEDESATQIKSEYEAKLAAKKIFENVARHGSKYIYLEDLMRFVAEDEASKTMSLFEGASESRKISKSSLKNWVVNVFRERRALALTLNDTKTAVNQLHRMVNILVSVVILVIWLLILGIATSKFLLFVTSQLFLVAFVFGNTCKTVFEAIIFLFVMHPFDVGDRCEIEGVQMIVEEMNIMTTLFLRYDSQKIIIPNSILATKAIQNYYRSPDMGDAIEFCLHISTPPEKIAVIKQRIVSYIEGKNEHWYPAPKIVIKDVEELNRMRLAIWPTHRMNHQDMGERWARRSLLVEELVKILQELDLQHRLLPLDINVRSLPPVTSTRFPATWTATASSEADKEINQSMDGTRGL 937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2865666 2870648 - Hsped.08g03200.1 Hepe08g0320 576292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0320 937 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 19 917 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Hepe08g0320 937 FunFam Predicted mechanosensitive ion channel 744 793 - -
Hepe08g0320 937 PIRSF Memb_At2g17000 28 935 IPR016688 -
Hepe08g0320 937 MobiDBLite consensus disorder prediction 173 266 - -
Hepe08g0320 937 SUPERFAMILY Sm-like ribonucleoproteins 734 793 IPR010920 -
Hepe08g0320 937 MobiDBLite consensus disorder prediction 178 220 - -
Hepe08g0320 937 Coils Coil 474 497 - -
Hepe08g0320 937 MobiDBLite consensus disorder prediction 917 937 - -
Hepe08g0320 937 Gene3D - 744 793 IPR023408 -
Hepe08g0320 937 Pfam Mechanosensitive ion channel, beta-domain 737 794 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0320 K22048 - - csv:101210264 1414.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0405 Hepe-Chr3:5803083 Hepe08g0320 Hepe-Chr8:2865666 1.66e-164 transposed
Hepe09g0905 Hepe-Chr9:9063865 Hepe08g0320 Hepe-Chr8:2865666 2.10e-164 transposed
Hepe02g0399 Hepe-Chr2:3826959 Hepe08g0320 Hepe-Chr8:2865666 1.28e-178 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g1964 . 122 510 Mechanosensitive Ion Channel Family AT4G00290 65.6 4.6e-146 515.0
Hepe10g0430 . 10 688 Mechanosensitive Ion Channel Family AT5G10490 57.1 1.9e-200 696.0
Hepe07g0565 . 64 724 Mechanosensitive Ion Channel Family AT5G10490 57.9 2.5e-195 679.1
Hepe10g0430 . 10 653 Mechanosensitive Ion Channel Family AT1G58200 56.9 1.5e-192 669.8
Hepe07g0565 . 6 696 Mechanosensitive Ion Channel Family AT1G58200 51.4 3.2e-174 609.0
Hepe08g0320 . 39 920 Mechanosensitive Ion Channel Family AT1G53470 55.5 3.4e-261 898.3
Hepe08g0320 . 39 915 Mechanosensitive Ion Channel Family AT3G14810 51.8 3.1e-243 838.6
Hepe08g0320 . 39 920 Mechanosensitive Ion Channel Family AT1G78610 58.4 3.9e-278 954.5
Hepe08g0320 . 216 916 Mechanosensitive Ion Channel Family AT2G17000 60.2 3.4e-234 808.5
Hepe09g0905 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.0 6.0e-195 677.9
Hepe03g0405 . 108 684 Mechanosensitive Ion Channel Family AT5G12080 50.3 2.6e-150 529.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67