Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0326 ATGGAGTTCACCTTGAAGCTCCCCAATCATCTTCCTCGCAGTCATGGCCACAAATCTCTTACTCTACTTCAACGTTCAACCTTGTATGGCAACAACAAACCTGCCTCCCTTGCTCGACCCAGACGGAAAGTTACGTTCTCTTCCGGCTATATTACAAGGAATTCTGCCCCTTTTCCTTCCACCAGGCATTGTCACAGACATTTTCTTCCAAAAGAAGCTCGGGGCACACGACTCAAAACTCAAACATCTGTGAAACCAGTGAATGAGGAATTAGTAGAGGATAAGTCCAAGGATCTTCCCGTGACTGGGGATTCCATTCGTCGTCGGTTTCTTCAATTTTATGCTTCCCGTGGACACAAAGTTCTTCCCAGTGCTTCTTTGGTACCAGAAGATCCCACGGTGTTATTGACAATTGCAGGAATGCTTCAATTCAAGCCTATATTCCTCGGAAAGATACCTAGACTGGTGCCTTGTGCTGCAACTTCGCAAAAGTGCATACGTACAAATGATGTGGAGAATGTAGGTCGAACGGCTAGACATCATACGTTCTTTGAGATGCTTGGAAACTTCAGTTTTGGTGATTATTTCAAGAAAGAAGCAATTAAGTGGGCATGGGAGCTGACAACCATTGAATTTGGGTTGCCAGCCAACAAACTATGGATTAGTATCTACGAAGAAGATGATGAGGCTTTTGCAATATGGCATGACGAGGTAGGTGTTCCTGTTGATCGTATAAAGAGGATGGGCGAGGATGACAACTTTTGGACTAGTGGCATCACGGGTCCATGTGGCCCATGCTCTGAGATTTATTATGATTTCCAACCTGAAAAGGGGTATTCTGATGTTGATTTGGGAGATGATACAAGGTTTATGGAGTTCTACAACTTAGTTTTCATGCAATACAACAAAAAGGATGATGGTTCCCTCGAACCTTTGAAACAGAAGAATATAGATACAGGGCTTGGTTTAGAGCGCATGGCTCGCATACTCCAAAAAGTTCCGAACAATTATGAGACTGACTTGATCTATCCCATTATACGGAAGGCCTCAGAATTAGCAAATGTGACGTATGACACTGCTGATAATCAATCAAAAACAAACCTTAAAATCATTGGAGACCATATGCGTGCAGTTGTATACCTGATATCTGATGGAGTTGTCCCATCCAATATTGGGAGGGGATATGTTGTCCGCAGGCTTATCCGAAGAGTTGTTCGTACTGGTAGGCTGCTTGGAATAAAGGGAGATGGTAGAGGCAATATTGATGGGGCATTTACACCACTTATTGCAGAAAAGGTCATTGCATTAAGCACCCACATCGACGAGGATGTAAAGGGTAGAGCAGGCCGCATTCTTGAGGAGCTGAGAAGGGAAGAACTTAGGTTTGTACAGACACTAGAGCGAGGGGAAAAGCTGCTAGAAGAAATGCTAGCTGATGCATTGGCAAGTGCTAAAGAGGATGGAAGAGTTCCTTGTTTGGCTGGTAAAGATGCATTTCTGTTGTATGATACATATGGGTTTCCAGTGGAGATTACCACAGAAGTTGCTCAAGAGCGTGGTGTAGTAGTTGATATGGAGGGTTTTGATATTGAAATGAATAATCAGAGGCGACAATCTCAGGCTGCACACAATACTGTTAAACTTGAAGTTGGAGAAGGTGCAGATATCATGGAAAATATCTCCGACACAGAATTTCTTGGATATGATACGCTCTCTGCTAAAGCAATTGTGGAAAGTCTTATTGTAAATGGTAATCCCGTGTCACAGGTTTCAGAAGGAAATGATGTAGAACTTTTGTTGAATAGGACTCCTTTCTATGCGGAATCTGGTGGTCAGATTGGAGACCATGGTTTCATCTATATTTCAGAAGGTGAAAACAGACAGAACGTAGTAGTGGAGGTAAAAGATGTACAAAAGTCTGCGGGCAGCAAATTTGTTCACAAGGGTACCATCAAACAGGGAGTTCTAGAGGTTGGAAGAGAAGTGGAAGCAACAGTAGATGCAGAGTTGAGGCAGGGAGCCAAGGTTCATCACACTGCTACGCATTTGCTACAATCTGCACTTAAGAGGATTATAGGCCAAGAAACATCACAAGCTGGTTCCTTGGTTGCGTTTGACCGGCTCAGATTTGATTTCAACTACCACCAACCTCTTGTTGACACTGAGATCTTGCAAATTGAGGAGCTGATCAATGGTTGGATTGGAGATGCTGTGCTTCTTCAAACTAAAGTTATGCCTCTTGCTGATGCCAAAGGAGCTGGGGCTATTGCTATGTTTGGAGAGAAGTATGGAGAAGAGGTACGTGTTGTTGAGGTTCCTGGTGTATCACTGGAACTCTGTGGTGGGACTCATGTATTCAACACTTCAGAAATACGAGGTTTTAAAATAATCTCAGAGCAGGGCATTGCATCTGGAGTTCGGCGAATAGAGGCCGTGGCTGGTGATACTTTTATTGAGTACGTTAATGCTAGAGACCTCCATATGAAGCGGCTGTGCACCATGTTCAAAGTAAAAGCTGAAGATGTTACAACTCGGGTAGAAAATCTCGTCGAGGAATTACGGTTGGCAAGAAATGAAATCTCTAATTTGCGTGAAAAAACTGCAGTTTTTAAAGCATCAAGCATTGCTAATAAGGCGTTTGTGGTTGGAACTTCAAAAGAGATCAGGTGA 2670 43.26 MEFTLKLPNHLPRSHGHKSLTLLQRSTLYGNNKPASLARPRRKVTFSSGYITRNSAPFPSTRHCHRHFLPKEARGTRLKTQTSVKPVNEELVEDKSKDLPVTGDSIRRRFLQFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPIFLGKIPRLVPCAATSQKCIRTNDVENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWAWELTTIEFGLPANKLWISIYEEDDEAFAIWHDEVGVPVDRIKRMGEDDNFWTSGITGPCGPCSEIYYDFQPEKGYSDVDLGDDTRFMEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERMARILQKVPNNYETDLIYPIIRKASELANVTYDTADNQSKTNLKIIGDHMRAVVYLISDGVVPSNIGRGYVVRRLIRRVVRTGRLLGIKGDGRGNIDGAFTPLIAEKVIALSTHIDEDVKGRAGRILEELRREELRFVQTLERGEKLLEEMLADALASAKEDGRVPCLAGKDAFLLYDTYGFPVEITTEVAQERGVVVDMEGFDIEMNNQRRQSQAAHNTVKLEVGEGADIMENISDTEFLGYDTLSAKAIVESLIVNGNPVSQVSEGNDVELLLNRTPFYAESGGQIGDHGFIYISEGENRQNVVVEVKDVQKSAGSKFVHKGTIKQGVLEVGREVEATVDAELRQGAKVHHTATHLLQSALKRIIGQETSQAGSLVAFDRLRFDFNYHQPLVDTEILQIEELINGWIGDAVLLQTKVMPLADAKGAGAIAMFGEKYGEEVRVVEVPGVSLELCGGTHVFNTSEIRGFKIISEQGIASGVRRIEAVAGDTFIEYVNARDLHMKRLCTMFKVKAEDVTTRVENLVEELRLARNEISNLREKTAVFKASSIANKAFVVGTSKEIR 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2916464 2924745 + Hsped.08g03260.1 Hepe08g0326 576298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0326 889 Gene3D - 551 666 - -
Hepe08g0326 889 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 338 567 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Hepe08g0326 889 SMART tRNA_SAD_4 767 810 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Hepe08g0326 889 FunFam Alanine--tRNA ligase 738 791 - -
Hepe08g0326 889 PANTHER ALANYL-TRNA SYNTHETASE 97 880 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005829(PANTHER)|GO:0006419(PANTHER)
Hepe08g0326 889 Hamap Alanine--tRNA ligase [alaS]. 102 889 IPR023033 GO:0004813(InterPro)
Hepe08g0326 889 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 767 810 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Hepe08g0326 889 SUPERFAMILY Translation proteins 562 666 IPR009000 -
Hepe08g0326 889 CDD AlaRS_core 104 333 - -
Hepe08g0326 889 FunFam Alanine--tRNA ligase 101 334 - -
Hepe08g0326 889 Coils Coil 839 866 - -
Hepe08g0326 889 Gene3D - 814 876 - -
Hepe08g0326 889 SUPERFAMILY Class II aaRS and biotin synthetases 102 337 IPR045864 -
Hepe08g0326 889 Pfam tRNA synthetases class II (A) 106 669 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Hepe08g0326 889 Gene3D - 677 812 - -
Hepe08g0326 889 PRINTS Alanyl-tRNA synthetase signature 369 385 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Hepe08g0326 889 PRINTS Alanyl-tRNA synthetase signature 393 406 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Hepe08g0326 889 PRINTS Alanyl-tRNA synthetase signature 169 180 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Hepe08g0326 889 PRINTS Alanyl-tRNA synthetase signature 291 302 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Hepe08g0326 889 PRINTS Alanyl-tRNA synthetase signature 318 331 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Hepe08g0326 889 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 101 823 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Hepe08g0326 889 Gene3D - 738 791 - -
Hepe08g0326 889 FunFam Alanine--tRNA ligase, cytoplasmic 667 825 - -
Hepe08g0326 889 NCBIfam alanine--tRNA ligase 106 880 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Hepe08g0326 889 Gene3D Bira Bifunctional Protein; Domain 2 101 334 IPR045864 -
Hepe08g0326 889 FunFam Probable alanine--tRNA ligase, chloroplastic 552 666 - -
Hepe08g0326 889 SUPERFAMILY ThrRS/AlaRS common domain 666 825 IPR018163 GO:0000166(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0326 K01872 - - csv:101206513 1588.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1188 Hepe-Chr2:14924746 Hepe08g0326 Hepe-Chr8:2916464 9.51e-142 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g254 . . . . . . . Bma12g00865 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g0645 . . . . . . . . Bhi10g01224 Tan05g1079 Cmetu11g1332 . Hepe08g0326 . . . . . . . . . . . . Cme11g01236
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006559 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 3 3 1 38