Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0327 ATGGAAGGGATGGTAGTAAAGTCCAGGTTCAAAAGGGTTTGTGTGTTTTGTGGGAGCAGCACAGGAAAGAGAGACTGCTATAGAGATGCAGCCATTGATTTAGCTCAGGAGCTGGTTTCAAGAAGGTTGGGGCTTGTTTATGGAGGTGGGAGCATTGGGCTAATGGGTCTGGTTTCACAAGCTGTTCATCGTGGCGGAGGCAGAGTCATGGGGATCATTCCCAAGACATTAATGAACAAGGAGATAACTGGTGAAACAGTGGGGGAGGTAAGACCAGTAGACAACATGCACCAAAGGAAGGCAGAAATGGCCCGCCATTCAGATTGCTTTATAGCCCTACCAGGTGGGTATGGAACTATGGAAGAACTGTTAGAAGTCATCACTTGGGCTCAACTAGGCATCCATGACAAACCAGTTGGCTTGCTGAATGTGGACGGCTACTACAACTACCTCCTCACTTTCATCGGCCAAGCAGTGGACGATGGATTCATAAAACCATCACAACGCAACATCATAGTGTCAGCACCCAACGCCAAAGACCTGGTTCAGAAATTAGAGGAGTACGTGCCTGTTGTACACGACGAATTGATAGCGAAAGCAAGATGGGAAATTGAGCAGCCACAGCAGCAACAACAACAAAAACAACAAGTGGGGTTCGAACCCAAAACTTTCCAAGCTCAGATCGCCCTATAA 693 47.47 MEGMVVKSRFKRVCVFCGSSTGKRDCYRDAAIDLAQELVSRRLGLVYGGGSIGLMGLVSQAVHRGGGRVMGIIPKTLMNKEITGETVGEVRPVDNMHQRKAEMARHSDCFIALPGGYGTMEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIGQAVDDGFIKPSQRNIIVSAPNAKDLVQKLEEYVPVVHDELIAKARWEIEQPQQQQQQKQQVGFEPKTFQAQIAL 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2929794 2931229 + Hsped.08g03270.1 Hepe08g0327 576299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0327 230 PANTHER LOG FAMILY PROTEIN YJL055W 7 210 - GO:0005829(PANTHER)|GO:0009691(PANTHER)|GO:0016799(PANTHER)
Hepe08g0327 230 Gene3D - 3 187 - -
Hepe08g0327 230 Pfam Possible lysine decarboxylase 55 185 IPR031100 -
Hepe08g0327 230 SUPERFAMILY MCP/YpsA-like 9 188 - -
Hepe08g0327 230 NCBIfam Rossman fold protein, TIGR00730 family 11 188 IPR005269 GO:0009691(InterPro)|GO:0016787(InterPro)
Hepe08g0327 230 FunFam CASP-like protein 1 187 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0327 K22522 - - csv:101206133 407.527
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0327 Hepe-Chr8:2929794 Hepe08g0897 Hepe-Chr8:8155894 1.51e-104 dispersed
Hepe02g0383 Hepe-Chr2:3649241 Hepe08g0327 Hepe-Chr8:2929794 1.63e-131 wgd
Hepe04g0940 Hepe-Chr4:63675785 Hepe08g0327 Hepe-Chr8:2929794 4.66e-106 wgd
Hepe08g0327 Hepe-Chr8:2929794 Hepe08g1479 Hepe-Chr8:18298522 4.34e-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g252 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g3478 . . . . . . . . Bhi10g01226 Tan05g1073 Cmetu11g1629 . Hepe08g0327 . . . . . . . . . . . . Cme11g01234
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000072 8 13 9 10 10 8 15 8 8 8 8 8 15 8 9 12 8 3 15 8 9 9 9 9 7 7 8 15 16 7 287