Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0335 ATGGAAGCGAAGAAAGTAGCGATAATCGGAGCCGGAATAAGCGGTTTAGCGGCCTGCAAATTCATTCTTTCTAAAGGATTGATTCCGATTGTCTTCGAGGCGAGAGGCGCCATTGGCGGCGTTTGGACAGAGACGCTGCAGACGACGGCGCTACAGACGCCGAGAGAGATGTTCCAGTTCTCCGATTTCCCCTGGCCGAAATCGGTGACTGAGGATTTCCCCAAGTATAATCAAGTTCTCGATTACCTCAAATCTTACGCCGATCATTTCGGATTGTTGAAGCACATCAGATTCAACTCCAGAGTTCTTAGTATCGACTATGAAGGTTGCTCCGATGAGGAAATTGAAGGTTGGAATCTCTGGGGCGGCTCCGGCGAGGCTTTCGATGAACGGCGGAAATGGAGGATCAATGTCGTTGATGCTCGGACTAATGCTCCACTCGAGGGGATCGTTGTCGACTTCGTCGTACTCTGCATCGGAAGATTCAGCGACGTTCCAAACATCCCCGAATTCCCTCCAAATGAAGGCCCCGAAGCTTTCAAATCCGGTCAAGTTCTTCACTCTCTGGAATATTCCGCCTTGGATTTCGACACTGCTTCCAACCTCATCACCGACAAGCAAGTCACCGTCGTCGGTTTCCAGAAGTCCGCTCTCGACATCGCCATGGAATGCGCCAATGCCAATGGTCCGAAGAATCCCTGCACTGTGCTCTACAAAACCGAGCACTGGAACCTTCCCGATCATCATCCATGGGGAATCCCCATGTCATTTCTCTACCTGAACCGATTCGCAGAGCTTCTTATTCACAAACCTGGCGAGGGCTTCCTTCTCTATCTCCTCGCCGTCCTTCTTTCCCCAATTAGATGGTTGTTCTCGAAGATGGTAGAAACCCACGTGATGAAGAAGCACGGATTAGCCAAATACGGGATGGTGCCGAGCCATAGCTTTCTGCAGGACATCAGCTCGTGTTTAATTGCAACATTGCCTGAGAAATTCTACGAGAAAGTTGACGAAGGAAGCATAATTTTGAAGAAATCGCAGAGTTTCAGCTTCTGTGAAAACGGTATCATGATCGAAGGAGAAACCAAACCGATTCGCTCAGATTTGGTCATTTTGGCTACTGGATATAGAGGTGATCAGAAGCTTAAAGAAATCTTTACTTCCTCTACTTTTCGGGATTACATGACGTTTCACGATTCAGTGTTTCCCATTTACAGGCAATGCATTCATCCCAGAATCCCACAACTTGCAGTGGTTGGATTTACGGAAAGCTCTTCGAACTTGTTCACCTCGGAGATGCGGTGCCGATGGGTGGCGGAGTTTCTGGACGGCACGTTCAAGCTACCGAGTATCAAGGAGATGGAGAAGGACATAGGCAACTGGGAGAAGACCCTGAAGCATTACTCAGGCCCTTTCTCCAGGCGAGGTTGCATTGCCATTTTTCATATTTGGTACAGTGATCAGCTTTGCAAGGACATGGGGTGGAATCCCAGGAGGAAAAAGGGCTTTTTTGCGGACTTGTTTGTGCCTTATAGCCCTTCAGACTATGCCTCCCCTTAG 1560 48.85 MEAKKVAIIGAGISGLAACKFILSKGLIPIVFEARGAIGGVWTETLQTTALQTPREMFQFSDFPWPKSVTEDFPKYNQVLDYLKSYADHFGLLKHIRFNSRVLSIDYEGCSDEEIEGWNLWGGSGEAFDERRKWRINVVDARTNAPLEGIVVDFVVLCIGRFSDVPNIPEFPPNEGPEAFKSGQVLHSLEYSALDFDTASNLITDKQVTVVGFQKSALDIAMECANANGPKNPCTVLYKTEHWNLPDHHPWGIPMSFLYLNRFAELLIHKPGEGFLLYLLAVLLSPIRWLFSKMVETHVMKKHGLAKYGMVPSHSFLQDISSCLIATLPEKFYEKVDEGSIILKKSQSFSFCENGIMIEGETKPIRSDLVILATGYRGDQKLKEIFTSSTFRDYMTFHDSVFPIYRQCIHPRIPQLAVVGFTESSSNLFTSEMRCRWVAEFLDGTFKLPSIKEMEKDIGNWEKTLKHYSGPFSRRGCIAIFHIWYSDQLCKDMGWNPRRKKGFFADLFVPYSPSDYASP 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3023101 3028249 - Hsped.08g03350.1 Hepe08g0335 576307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0335 519 PIRSF FMO 2 512 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Hepe08g0335 519 FunFam Flavin-containing monooxygenase 2 176 - -
Hepe08g0335 519 Gene3D - 179 256 IPR036188 -
Hepe08g0335 519 Gene3D - 3 178 IPR036188 -
Hepe08g0335 519 Gene3D - 348 503 IPR036188 -
Hepe08g0335 519 PANTHER DIMETHYLANILINE MONOOXYGENASE 3 511 IPR050346 -
Hepe08g0335 519 SUPERFAMILY FAD/NAD(P)-binding domain 2 278 IPR036188 -
Hepe08g0335 519 FunFam Flavin-containing monooxygenase 356 508 - -
Hepe08g0335 519 Pfam Flavin-binding monooxygenase-like 3 498 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Hepe08g0335 519 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Hepe08g0335 519 SUPERFAMILY FAD/NAD(P)-binding domain 359 516 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0335 K00485 - - csv:101206134 940.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0335 Hepe-Chr8:3023101 Hepe09g0962 Hepe-Chr9:9741933 1.47e-136 dispersed
Hepe08g0334 Hepe-Chr8:3015949 Hepe08g0335 Hepe-Chr8:3023101 0.0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g232 . . . . . . . . . . Cma02g00290 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g00284 . . . . . . . Bhi10g01242 . . . Hepe08g0335 . . . . . . . . . . . . Cme11g01060
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000621 2 8 2 2 1 4 2 5 5 4 3 5 4 3 4 4 4 1 1 3 4 3 2 4 4 3 1 4 3 7 102