Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0339 ATGGAGAATACGGGAATTCTGAAGGAGTGGTTCGATCGAGTTGATTCAGAGAAATCTGGAAGCATCACATCTCTTCAGCTTCAGAAAGCTCTGGCTGTTGGAAACCTCATCTTTTCCCTCTCAATTGTCCAGCAAATGATCAGAATGTATGATTTTGATAGAAATGGAACTATGAGCTTCGAAGAGTTTGTAGCTCTCAACAACTTCCTCCTTAAGCTTCAGCAAGCATTCTCTGACTTGGAAAGGGGTCGTGGTTATCTAGTCCCAGATGATGTATATGAGGCATTGGTTAAAATTGGCTTCACGCTAGACTCTCCAGCTTTTTTTACTGTCTGCGAGAGCTTTGATCAGAAGAAGAATGGGAGATTTCGTCTAGACGACTTCATATCTCTCTGTATATTTGTTCAATCAGCTGGGAATTTGTTTAAATCTTTTGATACAGCAAAAGAAGGCAGGGTGACTCTAGATCTCAACCAATTTGTCTATTGCAGTGAGTATCTGAATTAG 507 40.63 MENTGILKEWFDRVDSEKSGSITSLQLQKALAVGNLIFSLSIVQQMIRMYDFDRNGTMSFEEFVALNNFLLKLQQAFSDLERGRGYLVPDDVYEALVKIGFTLDSPAFFTVCESFDQKKNGRFRLDDFISLCIFVQSAGNLFKSFDTAKEGRVTLDLNQFVYCSEYLN 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3052242 3055900 - Hsped.08g03390.1 Hepe08g0339 576311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0339 168 PANTHER PEFLIN 5 164 IPR051426 -
Hepe08g0339 168 SUPERFAMILY EF-hand 7 163 IPR011992 -
Hepe08g0339 168 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509(InterPro)
Hepe08g0339 168 Gene3D - 2 166 - -
Hepe08g0339 168 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Hepe08g0339 168 SMART efh_1 42 70 IPR002048 GO:0005509(InterPro)
Hepe08g0339 168 SMART efh_1 6 34 IPR002048 GO:0005509(InterPro)
Hepe08g0339 168 Pfam EF-hand domain pair 7 65 IPR002048 GO:0005509(InterPro)
Hepe08g0339 168 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0339 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g151 . Blo15g00376 . Bda08g00995 . Bpe12g00119 Bma05g00363 . Cmo19g00741 . Cma02g00253 Cma20g00756 . Car20g00657 . . . Bhi05g01727 . . . . . . Cla02g00434 . . . . . . . . . . . . . . . Blo13g00508 Bda15g01036 . . Bpe05g00285 Bma03g00604 Bma08g00755 . Cmo02g00252 Cmo20g00752 . Cma19g00733 . Car19g00562 Cpe16g00313 . Bhi10g01253 . . . Hepe08g0339 . . Cla02g01163 . . . . . . . . . Cme11g00385
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011282 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31