Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0340 ATGTCTATTTTCCGGGAAAATTTGGTGTCTTTAAAAGAAAATCTCCACACCCACTTTGGAATTCCAATCATTCTTCGAACGATCAGAAATTCAGATAGTGATTTGAAGGAAAACGAGTGTAAGAAGAAAGAAAAAGAGAAGTGGGTAATGGAGAACGTAAGAAAAAATGGTTTGAGTCCAAGTTCATCGACTTCTAATGGAGGTGCATCAGGATCTTATGGAAGTGTGGATGTGATTAACGATTTGACGGAAGCGACTGAGTTAATCGTAGTGATTGGGCGTTTTTCTGGGTTTCGAAAGATTCTACCGAAGTTGTACTGTTTGAATTTGGTGAGGAAATTGAAGATGCTTGCGCCATTGTTCGAGGAGATTAGGGATCTTCATGATGCGGTTCCTCCTCAGGCCTTGCGTTGCCATCTTTCTCGTTTCAAAGAGGCTCTTGTTTTCGCCAAAAGGTTGCTGAAGAATTGCCACAATGGGAGTAAGATTTTTCTGGCTTTTGAGAATGAGGCTGTGATGGCAAGGTTTCATGGTGTTTATGACAAATTGAAGGAGGCCCTTGATGGGATTCCTTATGATGCCCTTGGAGTCTCAGAGGAATTTAAAGAACAAGTTGAGCTCATGTCTACGCAACTCAAAAGAGCTAAGTGTCGGAAAGATACACAAGACATGGAACTAGCAATGGACTTGATAGTTGTATTTTCTAAAAATGATGAGAGAAATTCTGATCCTGTCATACTTGAAAGATTGGCAAATAAATTGGAACTACGTAGAGTTGCAGATTTGGAAGCAGAAACTGTAGCTGTTCAAAAATTAGTTAGTCGTAGAGGTGTACCGACTCCTGAAAGTTTCCAGCAAATTTTAGACCTTCTATGCAAATTTAAACAAATTGCAGGTATGGACACTAATGCTGTTCCTGTTGCTCCTGTTGCATTGAAACGCCTGCAACGATCTCGGTCGAGATTAATCCCACATGAATTCCTCTGTCCAATTACCTTAGAAGTCATGGAAGATCCTGTCATTGTGGCAACTGGGCAGACTTATGATCGAGAAAGTATACAAAAATGGTTGAATTGTAATCACCAGACCTGCCCCAAAACCGGACAAACGTTGTTGCATTTGTCACTAGCTCCAAATTATGCCCTCAAGAACCTCATTTTGGAATGGTGTCAAGAGAATGACTATGAGTTCCCAAAAAAGGAAGAAGTTGCTGGATTGGGTGAAACTCCGCCGGAACTTGCTGAGGAAATCTCCTCTGTAGTCCAAGATCTATCATCGAGTCAGTTGCCTGTCCAGAGAGAGGCTATCATCAAGATCCGGGTTCTCTCTAAGGAGAACTCCGAGAACAGAGTTTGGATTGCAAATAGCGGAATCATCCCTCCATTGGTTAAGCTTCTGTCCTACCCAGATCTCAGTTTCCAAGAACACACTGTAACCGCTCTATTGAACTTGTCTATCGACGACGCGAATAAAAGACTCATAGCAAGAGAAGGAGCCATTCCTGCCATCATAGAAATCCTGCAGCAAGGAACAGAGGAGGCCAAGGAGAATTCTGCTGCTGCCCTGTTCAGCTTGTCAATGTTAGATGAAAATAAGGTTATGATCGGTTCTCTAAAGGGAATCCCGCCATTAGTAGCTCTTCTCCGAGACGGTACAGTCCGAGGAAAGAAGGATGCTGCCACTGCACTCTTTAACCTCTCACTAAATCAATCAAACAAGCACCAGGCCATCAAAGCTGGTATCGTACCGCCCCTTCTGTTTTTACTTGAGGATAAGAGCTTAGGAATGGTTGATGAAGCTTTATCAATCTTGTTAATCCTCGCATCACATCCTGAGGGACGGGCCGAGATCAGTCATAACTCTTTCATCGAAATTCTAGTTAGCATCATAAAAGACGGGACACCGAAGAACAAGGAATGTGCTACATCTTTACTTCTAGAGCTGGGACTAAACCATTCACCTTCCATTTTGGTTGCACTGCAATTTGGTGTCTATGAACATTTGGTTGACCTCACAAGATGTGGGACAAGCAGAGCCCAGAGAAAAGCAAATTCACTTTTGCAGTATATGAGCAAATGTGAACACATTCCCTGA 2094 42.55 MSIFRENLVSLKENLHTHFGIPIILRTIRNSDSDLKENECKKKEKEKWVMENVRKNGLSPSSSTSNGGASGSYGSVDVINDLTEATELIVVIGRFSGFRKILPKLYCLNLVRKLKMLAPLFEEIRDLHDAVPPQALRCHLSRFKEALVFAKRLLKNCHNGSKIFLAFENEAVMARFHGVYDKLKEALDGIPYDALGVSEEFKEQVELMSTQLKRAKCRKDTQDMELAMDLIVVFSKNDERNSDPVILERLANKLELRRVADLEAETVAVQKLVSRRGVPTPESFQQILDLLCKFKQIAGMDTNAVPVAPVALKRLQRSRSRLIPHEFLCPITLEVMEDPVIVATGQTYDRESIQKWLNCNHQTCPKTGQTLLHLSLAPNYALKNLILEWCQENDYEFPKKEEVAGLGETPPELAEEISSVVQDLSSSQLPVQREAIIKIRVLSKENSENRVWIANSGIIPPLVKLLSYPDLSFQEHTVTALLNLSIDDANKRLIAREGAIPAIIEILQQGTEEAKENSAAALFSLSMLDENKVMIGSLKGIPPLVALLRDGTVRGKKDAATALFNLSLNQSNKHQAIKAGIVPPLLFLLEDKSLGMVDEALSILLILASHPEGRAEISHNSFIEILVSIIKDGTPKNKECATSLLLELGLNHSPSILVALQFGVYEHLVDLTRCGTSRAQRKANSLLQYMSKCEHIP 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3066365 3070618 + Hsped.08g03400.1 Hepe08g0340 576312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0340 697 PANTHER U BOX DOMAIN-CONTAINING 104 692 - -
Hepe08g0340 697 Gene3D - 104 191 IPR036537 GO:0007166(InterPro)
Hepe08g0340 697 SUPERFAMILY RING/U-box 323 398 - -
Hepe08g0340 697 FunFam RING-type E3 ubiquitin transferase 323 394 - -
Hepe08g0340 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 397 IPR013083 -
Hepe08g0340 697 Pfam Armadillo/beta-catenin-like repeat 529 567 IPR000225 GO:0005515(InterPro)
Hepe08g0340 697 Pfam Armadillo/beta-catenin-like repeat 446 485 IPR000225 GO:0005515(InterPro)
Hepe08g0340 697 Gene3D - 416 532 IPR011989 -
Hepe08g0340 697 Coils Coil 198 218 - -
Hepe08g0340 697 CDD RING-Ubox_PUB 324 376 IPR045210 -
Hepe08g0340 697 SUPERFAMILY ARM repeat 417 691 IPR016024 -
Hepe08g0340 697 ProSiteProfiles U-box domain profile. 322 396 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g0340 697 SMART arm_5 652 692 IPR000225 GO:0005515(InterPro)
Hepe08g0340 697 SMART arm_5 569 609 IPR000225 GO:0005515(InterPro)
Hepe08g0340 697 SMART arm_5 487 527 IPR000225 GO:0005515(InterPro)
Hepe08g0340 697 SMART arm_5 446 486 IPR000225 GO:0005515(InterPro)
Hepe08g0340 697 SMART arm_5 528 568 IPR000225 GO:0005515(InterPro)
Hepe08g0340 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 539 581 IPR000225 GO:0005515(InterPro)
Hepe08g0340 697 SMART Ubox_2 326 389 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g0340 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 457 499 IPR000225 GO:0005515(InterPro)
Hepe08g0340 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 498 540 IPR000225 GO:0005515(InterPro)
Hepe08g0340 697 FunFam RING-type E3 ubiquitin transferase 76 193 - -
Hepe08g0340 697 FunFam RING-type E3 ubiquitin transferase 405 696 - -
Hepe08g0340 697 Pfam U-box domain 323 393 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g0340 697 Gene3D - 533 694 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0340 Hepe-Chr8:3066365 Hepe08g0796 Hepe-Chr8:7142474 1.68e-85 dispersed
Hepe08g0340 Hepe-Chr8:3066365 Hepe10g1222 Hepe-Chr10:47330852 8.84e-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0340 - - - 0.0