Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0340 ATGTCTATTTTCCGGGAAAATTTGGTGTCTTTAAAAGAAAATCTCCACACCCACTTTGGAATTCCAATCATTCTTCGAACGATCAGAAATTCAGATAGTGATTTGAAGGAAAACGAGTGTAAGAAGAAAGAAAAAGAGAAGTGGGTAATGGAGAACGTAAGAAAAAATGGTTTGAGTCCAAGTTCATCGACTTCTAATGGAGGTGCATCAGGATCTTATGGAAGTGTGGATGTGATTAACGATTTGACGGAAGCGACTGAGTTAATCGTAGTGATTGGGCGTTTTTCTGGGTTTCGAAAGATTCTACCGAAGTTGTACTGTTTGAATTTGGTGAGGAAATTGAAGATGCTTGCGCCATTGTTCGAGGAGATTAGGGATCTTCATGATGCGGTTCCTCCTCAGGCCTTGCGTTGCCATCTTTCTCGTTTCAAAGAGGCTCTTGTTTTCGCCAAAAGGTTGCTGAAGAATTGCCACAATGGGAGTAAGATTTTTCTGGCTTTTGAGAATGAGGCTGTGATGGCAAGGTTTCATGGTGTTTATGACAAATTGAAGGAGGCCCTTGATGGGATTCCTTATGATGCCCTTGGAGTCTCAGAGGAATTTAAAGAACAAGTTGAGCTCATGTCTACGCAACTCAAAAGAGCTAAGTGTCGGAAAGATACACAAGACATGGAACTAGCAATGGACTTGATAGTTGTATTTTCTAAAAATGATGAGAGAAATTCTGATCCTGTCATACTTGAAAGATTGGCAAATAAATTGGAACTACGTAGAGTTGCAGATTTGGAAGCAGAAACTGTAGCTGTTCAAAAATTAGTTAGTCGTAGAGGTGTACCGACTCCTGAAAGTTTCCAGCAAATTTTAGACCTTCTATGCAAATTTAAACAAATTGCAGGTATGGACACTAATGCTGTTCCTGTTGCTCCTGTTGCATTGAAACGCCTGCAACGATCTCGGTCGAGATTAATCCCACATGAATTCCTCTGTCCAATTACCTTAGAAGTCATGGAAGATCCTGTCATTGTGGCAACTGGGCAGACTTATGATCGAGAAAGTATACAAAAATGGTTGAATTGTAATCACCAGACCTGCCCCAAAACCGGACAAACGTTGTTGCATTTGTCACTAGCTCCAAATTATGCCCTCAAGAACCTCATTTTGGAATGGTGTCAAGAGAATGACTATGAGTTCCCAAAAAAGGAAGAAGTTGCTGGATTGGGTGAAACTCCGCCGGAACTTGCTGAGGAAATCTCCTCTGTAGTCCAAGATCTATCATCGAGTCAGTTGCCTGTCCAGAGAGAGGCTATCATCAAGATCCGGGTTCTCTCTAAGGAGAACTCCGAGAACAGAGTTTGGATTGCAAATAGCGGAATCATCCCTCCATTGGTTAAGCTTCTGTCCTACCCAGATCTCAGTTTCCAAGAACACACTGTAACCGCTCTATTGAACTTGTCTATCGACGACGCGAATAAAAGACTCATAGCAAGAGAAGGAGCCATTCCTGCCATCATAGAAATCCTGCAGCAAGGAACAGAGGAGGCCAAGGAGAATTCTGCTGCTGCCCTGTTCAGCTTGTCAATGTTAGATGAAAATAAGGTTATGATCGGTTCTCTAAAGGGAATCCCGCCATTAGTAGCTCTTCTCCGAGACGGTACAGTCCGAGGAAAGAAGGATGCTGCCACTGCACTCTTTAACCTCTCACTAAATCAATCAAACAAGCACCAGGCCATCAAAGCTGGTATCGTACCGCCCCTTCTGTTTTTACTTGAGGATAAGAGCTTAGGAATGGTTGATGAAGCTTTATCAATCTTGTTAATCCTCGCATCACATCCTGAGGGACGGGCCGAGATCAGTCATAACTCTTTCATCGAAATTCTAGTTAGCATCATAAAAGACGGGACACCGAAGAACAAGGAATGTGCTACATCTTTACTTCTAGAGCTGGGACTAAACCATTCACCTTCCATTTTGGTTGCACTGCAATTTGGTGTCTATGAACATTTGGTTGACCTCACAAGATGTGGGACAAGCAGAGCCCAGAGAAAAGCAAATTCACTTTTGCAGTATATGAGCAAATGTGAACACATTCCCTGA 2094 42.55 MSIFRENLVSLKENLHTHFGIPIILRTIRNSDSDLKENECKKKEKEKWVMENVRKNGLSPSSSTSNGGASGSYGSVDVINDLTEATELIVVIGRFSGFRKILPKLYCLNLVRKLKMLAPLFEEIRDLHDAVPPQALRCHLSRFKEALVFAKRLLKNCHNGSKIFLAFENEAVMARFHGVYDKLKEALDGIPYDALGVSEEFKEQVELMSTQLKRAKCRKDTQDMELAMDLIVVFSKNDERNSDPVILERLANKLELRRVADLEAETVAVQKLVSRRGVPTPESFQQILDLLCKFKQIAGMDTNAVPVAPVALKRLQRSRSRLIPHEFLCPITLEVMEDPVIVATGQTYDRESIQKWLNCNHQTCPKTGQTLLHLSLAPNYALKNLILEWCQENDYEFPKKEEVAGLGETPPELAEEISSVVQDLSSSQLPVQREAIIKIRVLSKENSENRVWIANSGIIPPLVKLLSYPDLSFQEHTVTALLNLSIDDANKRLIAREGAIPAIIEILQQGTEEAKENSAAALFSLSMLDENKVMIGSLKGIPPLVALLRDGTVRGKKDAATALFNLSLNQSNKHQAIKAGIVPPLLFLLEDKSLGMVDEALSILLILASHPEGRAEISHNSFIEILVSIIKDGTPKNKECATSLLLELGLNHSPSILVALQFGVYEHLVDLTRCGTSRAQRKANSLLQYMSKCEHIP 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3066365 3070618 + Hsped.08g03400.1 Hepe08g0340 576312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0340 697 PANTHER U BOX DOMAIN-CONTAINING 104 692 - -
Hepe08g0340 697 Gene3D - 104 191 IPR036537 GO:0007166(InterPro)
Hepe08g0340 697 SUPERFAMILY RING/U-box 323 398 - -
Hepe08g0340 697 FunFam RING-type E3 ubiquitin transferase 323 394 - -
Hepe08g0340 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 397 IPR013083 -
Hepe08g0340 697 Pfam Armadillo/beta-catenin-like repeat 529 567 IPR000225 GO:0005515(InterPro)
Hepe08g0340 697 Pfam Armadillo/beta-catenin-like repeat 446 485 IPR000225 GO:0005515(InterPro)
Hepe08g0340 697 Gene3D - 416 532 IPR011989 -
Hepe08g0340 697 Coils Coil 198 218 - -
Hepe08g0340 697 CDD RING-Ubox_PUB 324 376 IPR045210 -
Hepe08g0340 697 SUPERFAMILY ARM repeat 417 691 IPR016024 -
Hepe08g0340 697 ProSiteProfiles U-box domain profile. 322 396 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g0340 697 SMART arm_5 652 692 IPR000225 GO:0005515(InterPro)
Hepe08g0340 697 SMART arm_5 569 609 IPR000225 GO:0005515(InterPro)
Hepe08g0340 697 SMART arm_5 487 527 IPR000225 GO:0005515(InterPro)
Hepe08g0340 697 SMART arm_5 446 486 IPR000225 GO:0005515(InterPro)
Hepe08g0340 697 SMART arm_5 528 568 IPR000225 GO:0005515(InterPro)
Hepe08g0340 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 539 581 IPR000225 GO:0005515(InterPro)
Hepe08g0340 697 SMART Ubox_2 326 389 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g0340 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 457 499 IPR000225 GO:0005515(InterPro)
Hepe08g0340 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 498 540 IPR000225 GO:0005515(InterPro)
Hepe08g0340 697 FunFam RING-type E3 ubiquitin transferase 76 193 - -
Hepe08g0340 697 FunFam RING-type E3 ubiquitin transferase 405 696 - -
Hepe08g0340 697 Pfam U-box domain 323 393 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe08g0340 697 Gene3D - 533 694 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0340 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0340 Hepe-Chr8:3066365 Hepe08g0796 Hepe-Chr8:7142474 1.68e-85 dispersed
Hepe08g0340 Hepe-Chr8:3066365 Hepe10g1222 Hepe-Chr10:47330852 8.84e-90 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2080 . 1 899 U-box Gene Family AT5G15400 76.3 0.0e+00 1364.0
Hepe08g1171 . 196 829 U-box Gene Family AT2G23140 66.0 6.7e-118 421.8
Hepe10g0096 . 1 771 U-box Gene Family AT1G24330 59.4 6.2e-243 837.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G24330 65.5 4.8e-211 731.5
Hepe10g0096 . 1 770 U-box Gene Family AT1G67530 59.7 6.5e-240 827.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G67530 65.2 4.0e-205 711.8
Hepe04g1801 . 1 362 U-box Gene Family AT4G21350 62.1 1.6e-119 426.4
Hepe06g1836 . 134 457 U-box Gene Family AT3G07360 57.8 1.2e-83 307.0
Hepe01g0523 . 258 444 U-box Gene Family AT1G71020 71.8 3.4e-74 276.2
Hepe02g2667 . 264 461 U-box Gene Family AT1G71020 55.0 7.5e-53 205.3
Hepe01g1046 . 217 421 U-box Gene Family AT1G71020 51.4 5.5e-48 189.1
Hepe08g0796 . 256 432 U-box Gene Family AT1G71020 56.3 9.5e-48 188.3
Hepe10g1222 . 258 427 U-box Gene Family AT1G71020 57.8 9.5e-48 188.3
Hepe01g0523 . 16 648 U-box Gene Family AT1G23030 57.1 6.1e-108 388.7
Hepe08g0796 . 93 636 U-box Gene Family AT2G28830 52.3 2.4e-101 366.7
Hepe10g1222 . 93 638 U-box Gene Family AT2G28830 57.3 3.6e-94 342.8
Hepe10g1222 . 1 648 U-box Gene Family AT3G46510 67.2 2.5e-160 562.8
Hepe08g0796 . 3 642 U-box Gene Family AT3G46510 64.7 1.4e-158 557.0
Hepe01g1046 . 9 628 U-box Gene Family AT3G46510 57.4 1.2e-120 431.0
Hepe01g1046 . 1 630 U-box Gene Family AT3G54850 67.4 3.6e-164 575.5
Hepe08g0796 . 13 629 U-box Gene Family AT3G54850 54.6 1.2e-111 401.0
Hepe08g0340 . 144 696 U-box Gene Family AT5G42340 64.0 3.3e-120 429.5
Hepe04g0691 . 1 667 U-box Gene Family AT5G01830 57.8 4.7e-202 701.4
Hepe07g1836 . 1 711 U-box Gene Family AT1G29340 60.6 1.7e-234 809.3
Hepe02g1008 . 27 442 U-box Gene Family AT5G37490 50.8 1.4e-111 400.2
Hepe05g0444 . 3 412 U-box Gene Family AT3G52450 52.2 1.5e-121 433.3
Hepe04g0644 . 7 425 U-box Gene Family AT3G52450 53.1 3.2e-119 425.6
Hepe05g0444 . 2 410 U-box Gene Family AT2G35930 54.3 1.2e-123 440.3
Hepe08g0193 . 6 407 U-box Gene Family AT2G35930 52.1 8.8e-119 424.1
Hepe04g0644 . 6 425 U-box Gene Family AT2G35930 52.7 3.3e-118 422.2
Hepe04g1125 . 1 402 U-box Gene Family AT5G64660 54.5 6.2e-120 427.9
Hepe04g1125 . 1 402 U-box Gene Family AT5G09800 51.7 7.2e-105 377.9
Hepe01g1842 . 1 454 U-box Gene Family AT3G49810 64.8 2.7e-161 565.5
Hepe08g1345 . 1 434 U-box Gene Family AT3G49810 62.8 2.7e-153 538.9
Hepe01g1842 . 1 454 U-box Gene Family AT5G65920 63.9 4.8e-155 544.7
Hepe08g1345 . 1 434 U-box Gene Family AT5G65920 64.5 7.2e-151 530.8
Hepe05g1955 . 73 948 U-box Gene Family AT2G45910 51.2 1.2e-231 800.0
Hepe06g1389 . 35 828 U-box Gene Family AT4G25160 53.8 2.6e-226 782.3
Hepe02g3127 . 60 556 U-box Gene Family AT5G40140 56.9 1.2e-91 334.3
Hepe07g2250 . 30 492 U-box Gene Family AT5G40140 50.4 1.2e-51 201.4
Hepe08g1513 . 4 812 U-box Gene Family AT1G76390 61.3 2.6e-271 931.8
Hepe08g1513 . 13 812 U-box Gene Family AT1G20780 62.7 1.7e-280 962.2
Hepe10g0096 . 1 773 U-box Gene Family AT1G27910 62.8 1.7e-264 909.1
Hepe10g1529 . 1 768 U-box Gene Family AT1G27910 55.1 1.4e-218 756.5
Hepe04g1316 . 1 591 U-box Gene Family AT5G67530 74.2 2.8e-259 891.3
Hepe05g1885 . 3 157 U-box Gene Family AT5G67530 53.5 3.2e-45 180.3
Hepe05g1688 . 1 517 U-box Gene Family AT1G04510 74.4 3.0e-225 778.1
Hepe05g1688 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Hepe06g1837 . 10 278 U-box Gene Family AT3G07370 65.4 4.7e-100 361.3
Hepe02g2080 . 1 899 U-box Gene Family AT5G15400 76.3 0.0e+00 1364.0
Hepe08g1171 . 196 829 U-box Gene Family AT2G23140 66.0 6.7e-118 421.8
Hepe10g0096 . 1 771 U-box Gene Family AT1G24330 59.4 6.2e-243 837.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G24330 65.5 4.8e-211 731.5
Hepe10g0096 . 1 770 U-box Gene Family AT1G67530 59.7 6.5e-240 827.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G67530 65.2 4.0e-205 711.8
Hepe04g1801 . 1 362 U-box Gene Family AT4G21350 62.1 1.6e-119 426.4
Hepe06g1836 . 134 457 U-box Gene Family AT3G07360 57.8 1.2e-83 307.0
Hepe01g0523 . 258 444 U-box Gene Family AT1G71020 71.8 3.4e-74 276.2
Hepe02g2667 . 264 461 U-box Gene Family AT1G71020 55.0 7.5e-53 205.3
Hepe01g1046 . 217 421 U-box Gene Family AT1G71020 51.4 5.5e-48 189.1
Hepe08g0796 . 256 432 U-box Gene Family AT1G71020 56.3 9.5e-48 188.3
Hepe10g1222 . 258 427 U-box Gene Family AT1G71020 57.8 9.5e-48 188.3
Hepe01g0523 . 16 648 U-box Gene Family AT1G23030 57.1 6.1e-108 388.7
Hepe08g0796 . 93 636 U-box Gene Family AT2G28830 52.3 2.4e-101 366.7
Hepe10g1222 . 93 638 U-box Gene Family AT2G28830 57.3 3.6e-94 342.8
Hepe10g1222 . 1 648 U-box Gene Family AT3G46510 67.2 2.5e-160 562.8
Hepe08g0796 . 3 642 U-box Gene Family AT3G46510 64.7 1.4e-158 557.0
Hepe01g1046 . 9 628 U-box Gene Family AT3G46510 57.4 1.2e-120 431.0
Hepe01g1046 . 1 630 U-box Gene Family AT3G54850 67.4 3.6e-164 575.5
Hepe08g0796 . 13 629 U-box Gene Family AT3G54850 54.6 1.2e-111 401.0
Hepe08g0340 . 144 696 U-box Gene Family AT5G42340 64.0 3.3e-120 429.5
Hepe04g0691 . 1 667 U-box Gene Family AT5G01830 57.8 4.7e-202 701.4
Hepe07g1836 . 1 711 U-box Gene Family AT1G29340 60.6 1.7e-234 809.3
Hepe02g1008 . 27 442 U-box Gene Family AT5G37490 50.8 1.4e-111 400.2
Hepe05g0444 . 3 412 U-box Gene Family AT3G52450 52.2 1.5e-121 433.3
Hepe04g0644 . 7 425 U-box Gene Family AT3G52450 53.1 3.2e-119 425.6
Hepe05g0444 . 2 410 U-box Gene Family AT2G35930 54.3 1.2e-123 440.3
Hepe08g0193 . 6 407 U-box Gene Family AT2G35930 52.1 8.8e-119 424.1
Hepe04g0644 . 6 425 U-box Gene Family AT2G35930 52.7 3.3e-118 422.2
Hepe04g1125 . 1 402 U-box Gene Family AT5G64660 54.5 6.2e-120 427.9
Hepe04g1125 . 1 402 U-box Gene Family AT5G09800 51.7 7.2e-105 377.9
Hepe01g1842 . 1 454 U-box Gene Family AT3G49810 64.8 2.7e-161 565.5
Hepe08g1345 . 1 434 U-box Gene Family AT3G49810 62.8 2.7e-153 538.9
Hepe01g1842 . 1 454 U-box Gene Family AT5G65920 63.9 4.8e-155 544.7
Hepe08g1345 . 1 434 U-box Gene Family AT5G65920 64.5 7.2e-151 530.8
Hepe05g1955 . 73 948 U-box Gene Family AT2G45910 51.2 1.2e-231 800.0
Hepe06g1389 . 35 828 U-box Gene Family AT4G25160 53.8 2.6e-226 782.3
Hepe02g3127 . 60 556 U-box Gene Family AT5G40140 56.9 1.2e-91 334.3
Hepe07g2250 . 30 492 U-box Gene Family AT5G40140 50.4 1.2e-51 201.4
Hepe08g1513 . 4 812 U-box Gene Family AT1G76390 61.3 2.6e-271 931.8
Hepe08g1513 . 13 812 U-box Gene Family AT1G20780 62.7 1.7e-280 962.2
Hepe10g0096 . 1 773 U-box Gene Family AT1G27910 62.8 1.7e-264 909.1
Hepe10g1529 . 1 768 U-box Gene Family AT1G27910 55.1 1.4e-218 756.5
Hepe04g1316 . 1 591 U-box Gene Family AT5G67530 74.2 2.8e-259 891.3
Hepe05g1885 . 3 157 U-box Gene Family AT5G67530 53.5 3.2e-45 180.3
Hepe05g1688 . 1 517 U-box Gene Family AT1G04510 74.4 3.0e-225 778.1
Hepe05g1688 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Hepe06g1837 . 10 278 U-box Gene Family AT3G07370 65.4 4.7e-100 361.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007785 2 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 2 1 2 36