Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0359 ATGGATGACAAGCGAGGTATCAGCAGCAACAAGCCTGCCGACAAATGGATGGCATTTGACAGAGAATCAAACACTCCTGGAAACGAAGCAAAAGAAGACAGAAAAAGCTGGCAATCCTCTTCCAAAGGGGCAGTATCAACAGAAGCAATCATAGTAGAAAGGGCGGCGGAGTGGGGACTGGTGGTAGAGACAGACGTGGAAGAAGGCAGTTTCAAGGCCATCGTGGGGAGAGCATCAGGGGAAGGAGGGGGCAGCAAAATGTCATCAGAGAAAATCAGCGACGGAGGAAGAACTTCTAGCTTTAGCAATGAAACCTCTAGAGTTTTTCCAAGGGTATCACAAGAGTTGAAGGATGCTTTGGCTTCTTTGGAACAGACATTTGTAGTCTCTGATGCCACCAAACCAGACTGCCCCATCGTCTATGCCAGCAGTGGGTTCTTTGGCATGACTGGTTATGCTTCAGAGGAGGTCATTGGAAAGAACTGCCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGACAAAATTCGATATGCAGTGAAAAACGGCAAAAGCTACTGCGGGAGGCTCTTGAACTACAAGAAGAACGGCACTCCTTTCTGGAATCTTCTGACAGTCACGCCTATCAAGGATGACAACGGCAATACTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAGTACACAGAAGGCATAAATGATAGAGCATTACGACCAAACGGGTTGCCAAAGTCATTAATCCGCTATGATGCTCGCCAGAAGGAAAAGGCAAAGGATTCCATCACAGAGGTTGTTCAAACTGTGAAGCATCCTAAATCTCATAATCGAGCTATGAGTCATGACACTACCAGGAAAAAAGAAGAGTTGGAGAAGTTCAATCTTGACTATATTCTTCCAAAGTCAGTTGAAGCTGCAAATGATACACCAGGTAGACAAACTCCTCAACAGGACCTCAGAGATGATGGCTTAGGCAAGAAACCTAGGTTATCAAGTCGAGTTTCTTTAATGGGGTTCAAAGGGAAATCTCTAAGCAGTTCAAGAAAGCTTGAATCCACAGCCTTCGAACCAGAAATTTTGATGACTGATGAAGTAGAACGGACTGATAGTTGGGACCGTTCTGAAATAGAAAGGGATGTTCGCCAAGGAATTGATTTAGCTACTACATTGGAACGCATTGAGAAAAATTTTGTCATTACTGATCCAAGGCTTCCTGATAATCCAATTATATTTGCATCCGACAGCTTTCTTGAATTGACAGAATATACACGTGAAGAAATTTTGGGACGAAACTGTCGGTTTCTTCAAGGACCTGAAACAGATCAGGAAACTGTCTCAAAGATAAGGGATGCAATTAGGGAACAAAGAGAAATCACTGTTCAGTTGATCAACTATACCAAGACTGGTAAAAAGTTCTGGAATTTATTCCATTTGCAACCAATGCGTGATGAAACGGGAGAGCTTCAGTATTTTATCGGTGTACAACTAGATGGAAGTGGTCATGTGGAACCTTTGCAAAACCGCCTTTCTGAGACAGCAGAGCTGCAAAGTGCCAAGCTGGTTAAAGCCACTGCAGAGAATGTTGATGAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAAACCAGAAGATTTGTGGGCAATTCATTCTCAACCAGTCTACCCAAGGCCTCACAAGAAGCATAATTCTTCTTGGACTGCTATACAAAAGATTATTCGACGTGGTGAAAAAATTGGACTCCAACATTTTAAGCCAATTCAACCACTGGGTTGTGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTACAAGTGAACTTTATGCCTTGAAAGCAATGGAGAAATCAGCACTGTTGAATCGAAACAAGGTCCACAGAGCATGCATTGAAAGGCAAATCATTGCGCTTCTGGATCATCCTTTTCTTCCAACACTATACACTTCATTTCAGACCCCTACACACGTTTGCTTGATAACAGACTTTTGCTCTGGTGGAGAGTTATTCGCATTGCTTGATAAGCAGCCAATGAAAATGTTTAAAGAGGATTCTGCAAGGTTCTATGCTGCAGAGGTCGTCATTGGCTTGGAATATCTTCACTGTCTAGGAATCATTTATCGGGATCTGAAACCTGAAAATATTCTTCTCCAGAAGGATGGGCATGTTACGCTTGCTGACTTCGATTTATCACTCGTGACATCCTGCAAACCGCAGATTGTGAAGTATCCATTGCCTCAAGGTAGAAGGAGATCTCGAAGTCAACCACCGCCAGTATTTGTTGCAGAGCCGACAACGCAATCAAATTCATTTGTTGGAACTGAAGAGTATATTGCTCCTGAAATTATAACCGGGGAAGGCCACAGCAGCTCTATCGATTGGTGGGCTCTTGGTATCTTGTTGTATGAGATGCTTTATGGTCGCACGCCTTTCAGGGGAAAGAACAGGCAGAAGACTTTTGGTAACATCTTGCACAAAGATCTCACCTTCCCAAGTAGCATTCAGGTAAGTCTTGCAGCAAGGCAGTTGATCAATGCATTGCTACAAAGAGACCCGACCAGGCGCTTAGGATCAAGTACAGGTGCAAATGAAATCAAACAGCACCCCTTTTTCCAATCAATCAACTGGCCGCTGATCCGGTGTATGGTCCCACCACCATTAGAATCACCTCTTCAGCTTACTGGGAAAGATGGAACATCCAAGAACGTAAACTGGGAAGATGATGGGGTGCTTGGTGCAATGGATATGGATTTTTTCTGA 2763 43.87 MDDKRGISSNKPADKWMAFDRESNTPGNEAKEDRKSWQSSSKGAVSTEAIIVERAAEWGLVVETDVEEGSFKAIVGRASGEGGGSKMSSEKISDGGRTSSFSNETSRVFPRVSQELKDALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYASEEVIGKNCRFLQGPETDQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGMQVEVSKYTEGINDRALRPNGLPKSLIRYDARQKEKAKDSITEVVQTVKHPKSHNRAMSHDTTRKKEELEKFNLDYILPKSVEAANDTPGRQTPQQDLRDDGLGKKPRLSSRVSLMGFKGKSLSSSRKLESTAFEPEILMTDEVERTDSWDRSEIERDVRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETVSKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSGHVEPLQNRLSETAELQSAKLVKATAENVDEAVRELPDANLKPEDLWAIHSQPVYPRPHKKHNSSWTAIQKIIRRGEKIGLQHFKPIQPLGCGDTGSVHLVELLGTSELYALKAMEKSALLNRNKVHRACIERQIIALLDHPFLPTLYTSFQTPTHVCLITDFCSGGELFALLDKQPMKMFKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLVTSCKPQIVKYPLPQGRRRSRSQPPPVFVAEPTTQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIQVSLAARQLINALLQRDPTRRLGSSTGANEIKQHPFFQSINWPLIRCMVPPPLESPLQLTGKDGTSKNVNWEDDGVLGAMDMDFF 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3219992 3236136 - Hsped.08g03590.1 Hepe08g0359 576331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0359 920 Gene3D PAS domain 373 537 - -
Hepe08g0359 920 ProSiteProfiles Protein kinase domain profile. 585 872 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g0359 920 Gene3D Phosphorylase Kinase; domain 1 584 668 - -
Hepe08g0359 920 MobiDBLite consensus disorder prediction 306 331 - -
Hepe08g0359 920 CDD PAS 399 499 IPR000014 -
Hepe08g0359 920 Gene3D PAS domain 126 294 - -
Hepe08g0359 920 FunFam LOV domain-containing protein 373 537 - -
Hepe08g0359 920 ProSitePatterns Serine/Threonine protein kinases active-site signature. 706 718 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe08g0359 920 SMART serkin_6 585 872 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g0359 920 FunFam LOV domain-containing protein 584 668 - -
Hepe08g0359 920 Gene3D Transferase(Phosphotransferase) domain 1 669 890 - -
Hepe08g0359 920 SUPERFAMILY Protein kinase-like (PK-like) 561 895 IPR011009 -
Hepe08g0359 920 ProSiteProfiles PAS repeat profile. 384 457 IPR000014 -
Hepe08g0359 920 ProSiteProfiles PAS repeat profile. 112 185 IPR000014 -
Hepe08g0359 920 MobiDBLite consensus disorder prediction 1 18 - -
Hepe08g0359 920 FunFam Putative LOV domain-containing protein 126 282 - -
Hepe08g0359 920 ProSiteProfiles PAC domain profile. 458 512 IPR000700 -
Hepe08g0359 920 ProSiteProfiles PAC domain profile. 186 240 IPR000700 -
Hepe08g0359 920 PANTHER FLIPPASE KINASE 1-RELATED 534 891 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Hepe08g0359 920 NCBIfam PAS domain S-box protein 138 229 IPR000014 -
Hepe08g0359 920 NCBIfam PAS domain S-box protein 409 499 IPR000014 -
Hepe08g0359 920 SMART pac_2 461 503 IPR001610 -
Hepe08g0359 920 SMART pac_2 189 231 IPR001610 -
Hepe08g0359 920 CDD STKc_phototropin_like 583 891 - -
Hepe08g0359 920 MobiDBLite consensus disorder prediction 1 45 - -
Hepe08g0359 920 MobiDBLite consensus disorder prediction 77 104 - -
Hepe08g0359 920 SUPERFAMILY PYP-like sensor domain (PAS domain) 400 499 IPR035965 -
Hepe08g0359 920 ProSitePatterns Protein kinases ATP-binding region signature. 591 614 IPR017441 GO:0005524(InterPro)
Hepe08g0359 920 CDD PAS 139 228 IPR000014 -
Hepe08g0359 920 SUPERFAMILY PYP-like sensor domain (PAS domain) 133 225 IPR035965 -
Hepe08g0359 920 Pfam PAS domain 133 229 IPR000014 -
Hepe08g0359 920 Pfam PAS domain 407 499 IPR000014 -
Hepe08g0359 920 SMART pas_2 114 183 IPR000014 -
Hepe08g0359 920 SMART pas_2 386 455 IPR000014 -
Hepe08g0359 920 FunFam Putative LOV domain-containing protein 669 884 - -
Hepe08g0359 920 Pfam Protein kinase domain 588 872 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0359 Hepe-Chr8:3219992 Hepe08g2554 Hepe-Chr8:67162861 1.22e-94 dispersed
Hepe01g1071 Hepe-Chr1:75489427 Hepe08g0359 Hepe-Chr8:3219992 1.13e-51 transposed
Hepe08g0842 Hepe-Chr8:7607966 Hepe08g0359 Hepe-Chr8:3219992 0.0 transposed
Hepe08g2122 Hepe-Chr8:60135387 Hepe08g0359 Hepe-Chr8:3219992 2.44e-19 transposed
Hepe10g1713 Hepe-Chr10:53858706 Hepe08g0359 Hepe-Chr8:3219992 6.25e-57 transposed
Hepe02g0334 Hepe-Chr2:3193228 Hepe08g0359 Hepe-Chr8:3219992 0.0 wgd
Hepe04g1697 Hepe-Chr4:72109626 Hepe08g0359 Hepe-Chr8:3219992 5.58e-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73022 PF00069 Pkinase 6.40E-62 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0359 K20715 - csv:101215355 1708.35