Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0368 ATGGGATCATTAGGCGAGAAAACAATACTGGAATTTGAAGACGAGAGCCTTAAACTTGGTTACAGTAACATGAAGAACAGGGTATTTAACAGCATTAAGATTGTCGTCTTCTCCGCTAAAATCAACTTTCTCATGCCTTTTGGACCTTTAACAATATTAGTCAGCAATTTATCTGGTCACCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTTGCTGAGCGTTTGGGCTATGCAACTGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTTTGAATGCTACGTTTGGAAATGCCACAGAATTGATAATATCAATATATGCATTGCGAAGAGGAATGATACGTGTCGTTCAACAGTCATTATTAGGTTCAATTTTGTCTAATATGTTATTAGTACTTGGATGTGCCTTCTTTGCTGGTGGAGTTGTGGTTCCTAAGAGGGAGCAGGTCTTCAGTAAGGCAGCTGCTACATTGAATTCTGGATTGCTGTTAATGGCAGTAATGGGACTTCTATTTCCTGCTGTCCTTCGTTCCACACATACAGAGTTGCACTCTGGAAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCGGCATTATGTTGGTGGCATATGCTGCCTATCTTGTTTTTCAGTTGAAAAGCGAAAGGAACTTATATCAACCGGTCGATGATCAGGCGTCCACTGAAGAGAATTCTGATGATGAAGAAGCTCCTGAGATTTCAATGTGGGAATCCATTATTTGGCTGTCTATCTTGACCATCTGGATCTCCGTCCTCTCCGAATACTTAGTTAATGCGATAGAGGGGGCATCGATTGCCATGAACATACCGGTAGCATTCATCAGTGTTATCCTACTACCAATTGTTGGGAATGCTGCAGAGCATGCAGGTGCCATCATGTTTGCTATGAAAGACAAGCTTGACATTTCTTTGGGAGTCGCAATAGGATCGTCTACACAAATATCTATGTTTGGGATTCCTTTTTGTGTGGTCATTGGTTGGATCATGGGATGCCCTATGGACTTGAATTTTCAACTCTTCGAGACCGCCACGCTTTTCATCACTGTTATAGTTGTGGCCTTCATGTTGCAGGATGGAACTTCTAATTATCTCAAAGGACTGATGCTTATTCTCTGCTACCTGATAGTAGCGGCAAGTTTCTTTGTACATATTGATCCAGCTTCAGTTGGTAAGCTTTCACTCCCTTTGGGGCCCTACAAAACTGTTGACAGTCTTAACTTAAATATCAAAACTTTTACACAGATGATCAGACCCGAAAACCCGGTCAATGAAAGGCAAGGGACGACTCGGAGTAGTGAATCTGCCTGCAGAGGGGCCTCTTCAACCTAA 1368 42.47 MGSLGEKTILEFEDESLKLGYSNMKNRVFNSIKIVVFSAKINFLMPFGPLTILVSNLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGVVVPKREQVFSKAAATLNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSERNLYQPVDDQASTEENSDDEEAPEISMWESIIWLSILTIWISVLSEYLVNAIEGASIAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPASVGKLSLPLGPYKTVDSLNLNIKTFTQMIRPENPVNERQGTTRSSESACRGASST 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3303315 3309674 - Hsped.08g03680.1 Hepe08g0368 576340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0368 455 Pfam Sodium/calcium exchanger protein 62 218 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe08g0368 455 Pfam Sodium/calcium exchanger protein 251 393 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe08g0368 455 FunFam Vacuolar cation/proton exchanger 239 395 - -
Hepe08g0368 455 Gene3D - 238 395 IPR044880 -
Hepe08g0368 455 Gene3D - 91 231 IPR044880 -
Hepe08g0368 455 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 22 399 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Hepe08g0368 455 FunFam Vacuolar cation/proton exchanger 92 231 - -
Hepe08g0368 455 NCBIfam calcium/proton exchanger 45 394 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Hepe08g0368 455 MobiDBLite consensus disorder prediction 433 455 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1586 Hepe-Chr2:21052748 Hepe08g0368 Hepe-Chr8:3303315 8.89e-189 dispersed
Hepe06g0649 Hepe-Chr6:49068851 Hepe08g0368 Hepe-Chr8:3303315 2.22e-195 dispersed
Hepe08g0368 Hepe-Chr8:3303315 Hepe10g1320 Hepe-Chr10:49113599 1.40e-68 dispersed
Hepe08g0368 Hepe-Chr8:3303315 Hepe04g0753 Hepe-Chr4:61536010 1.32e-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0368 K07300 - csv:101215915 714.916