Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0372 ATGTTTGCAGCAGGGAAAAGTCAAATGTTTTGGTTGGATCATCTTCACTCACAGATTTTGGCTCTAGGCCTCACACTTCAGATCAGCCACTTGAATTGGCTAATGTGGCTTTACCCAAGATTTCCCAATTTCTGCTTATTGGTTCTTGTCAAGGATCTTTTGAAGCATCACATTTTTGGCATGCAGTTTTGCTGTCCTGGAACAAAAGTTGCTGGATTCTGCGGTGAGGACGATGTCCTCTATAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGAGCTATTTGAAAATTATGAGGACCTTTTCGAGAATGGTGGAATTGATAGCCTTTTTGAGGCAAAAGCCCTGTCTTTTGAAGATTCAGTTTGCCACAGTGCAGTTGCTGCAGAGGGGTCTGCCGTCGTAGTGGTTAAACCAATTCAGTCAGCCTGCAGCAATGGTGCCTCTGCTGACTCAATGATGAGTACTAAAACCGAACCGACTTTCTGTTTAAATACAAGACAAGCACAATCGGGTGTGTCGTTTTCTGGCCTTACAGGCGAGAGTAGTGTTGGTGATTATCAAGACTGTGGAGCCTCTTCAATTATTCTGATGGGAGAGCCTCCATGGTGTGCCCCTGGCCCTGAAAGTTCTTTCCCTTCTTCTGATCGCAACAATGCCGTTCTGCGTTATAAGGAGAAAAGGAAGACACGCAAGTTTGAGAAAAGAGTGAGGTACGCCACTCGCAAAGAGAGAGCCGATGTCAGAAGGCGTGTGAAGGGACGCTTTGTGAAGGCTGGAGAGGCATATGATTACGACCCGCTGAACCGGACTAGAAGCTGCTGA 840 45.36 MFAAGKSQMFWLDHLHSQILALGLTLQISHLNWLMWLYPRFPNFCLLVLVKDLLKHHIFGMQFCCPGTKVAGFCGEDDVLYKEFDMDEMDLNLENYEELFENYEDLFENGGIDSLFEAKALSFEDSVCHSAVAAEGSAVVVVKPIQSACSNGASADSMMSTKTEPTFCLNTRQAQSGVSFSGLTGESSVGDYQDCGASSIILMGEPPWCAPGPESSFPSSDRNNAVLRYKEKRKTRKFEKRVRYATRKERADVRRRVKGRFVKAGEAYDYDPLNRTRSC 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3343839 3348608 + Hsped.08g03720.1 Hepe08g0372 576344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0372 279 Coils Coil 86 106 - -
Hepe08g0372 279 Pfam CCT motif 222 264 IPR010402 GO:0005515(InterPro)
Hepe08g0372 279 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 78 269 - -
Hepe08g0372 279 ProSiteProfiles CCT domain profile. 222 264 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0372 Hepe-Chr8:3343839 Hepe08g0483 Hepe-Chr8:4252360 1.51e-14 dispersed
Hepe02g0327 Hepe-Chr2:3123089 Hepe08g0372 Hepe-Chr8:3343839 1.67e-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56098 PF06203 CCT 1.20E-15 CL0281 Hepe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0372 - - - 0.0