Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0373 ATGGGTCTCTCCAGCCTCCCTGCCCCTTCCGAAGGAGTATTAGGTTTGATCCTTGTAAATACAGCCCTATCAATTTCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCACGTCGTTGGCATCCATCTCTCGTCACCTGCGTCACCAGATTCCATGGAGAATGCTCCTGAATCCATAGAATTCCGTCATAACCCAAATGGAAGTTACATCGAAGAGTTCCGTAGTCGGATCCCAGCGATTCTGTTCGATAAGGTTCGTAGCTGCAAACGGCTCGAACAGGACTGCTCTGTCTGCCTGACCCAATTTGAACCTGAATCAGAGATAAACCATTTATCTTGTGGCCATCTTTTCCATAGTGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACCTTACGTGCCCACTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACAGCTTCCTGCTTCTGGTGA 456 48.68 MGLSSLPAPSEGVLGLILVNTALSISIFKGIVRSILHVVGIHLSSPASPDSMENAPESIEFRHNPNGSYIEEFRSRIPAILFDKVRSCKRLEQDCSVCLTQFEPESEINHLSCGHLFHSVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3353296 3355065 + Hsped.08g03730.1 Hepe08g0373 576345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0373 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 142 IPR013083 -
Hepe08g0373 151 SUPERFAMILY RING/U-box 94 143 - -
Hepe08g0373 151 PANTHER - 1 151 IPR044249 -
Hepe08g0373 151 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Hepe08g0373 151 SMART ring_2 95 136 IPR001841 -
Hepe08g0373 151 Pfam Ring finger domain 94 137 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0577 Hepe-Chr3:11369784 Hepe08g0373 Hepe-Chr8:3353296 1.71e-15 dispersed
Hepe02g0325 Hepe-Chr2:3102759 Hepe08g0373 Hepe-Chr8:3353296 1.86e-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0373 K16285 - csv:101216645 294.664