Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0395 ATGTGGAGGGGTTGCTCTGGCGGAGCTGGGGTTTTTCTCAAGCTCTCAAGGTGCTTACTGGGGATGTCTTTGAGCTGCAACTTTTCTACCTCTAACGGAAAATTTCCAGCTGGGTTTAAGCTGAAGAAGGCTAAGGAGCATCTCTGTTTCTTAAATTCCACCGGAAAATGGAAGAAGAAGCTTCTCTATCTTTGGATTTTTGCTGTAGTGTTGTTAGTTTTGAGCAGTTGGTTTTCCTTGCGTTCGTATAATGTGAATAGTGGAACAAAACAGAAGACCTCGAATTTGTTCCATGAAGAAACTCGAACTTTGCTGCGCCATTTCAATGTAAGCAAGAATCAGCTTCAAGCTTTAGCTTCCTTGTTATCCGAATCAGATCGGATGTCATCCATTGGTTGCACCAATGATTTTGGATCTGACAAATCACAGTTGGATGGAATTGCCTGTGCCCTGAGGTTACTGTACTGGGAGCAAGATTTGCACAAGCAGTATGTATGGGTTGAAGAAAGTGCAGGTTCCAATGTTGGGCAGTGCCCAATTCTAACTGAGATCCCTGAAAATTCTGACCAATTATTCTCTGAGGATATAACTGTTCCATTTGCTACAGACTTATCCGTCTCTTTACTTTCTACTGGACATCAGCTTTGTGGAAAGATAATTGAACAAGTAGGAGTGCTAAGATACCTTTTAAGTAAACACTGGAAGAGTTTCTGTAGTTTGTTGATTGGATGTTTTTGGGTTCTCCTTGGAGTGATTGTGTTCCAGAAAATATCGGGTTTCCATCTAAAATTGTGGAACAAGAAACATCCAAAGCCAAATCAGCCATTGGTTCATCAACAGTGGGTCTTACTACGGAGAAAACAGCATCAACAAGTCAAAGATTCTCCTAAAGGAGCTGGGAAATGGCGGAAGGTGCTCCTAAGGATATTTATTGTCGTTGGGATCATCGGATCCATTTGGTTATTTTGGTACTTGAACCAGACAACCATTTTGAGAAGAGAAGAAACACTTGCAAACATGTGTGATGAGCGAGCCCGGATGTTGCAGGACCAATTTAATGTTAGCATGAACCATGTTCATGCATTGGCCGTTCTTACCTCTACCTTCCACCATGGAAAACAACCTTCTGCCATTGATCAGAAAACATTTGGCGAGTATACAGAAAGAACATCCTTTGAAAGACCACTAACTAGTGGTGTAGCTTATGCTTTGAAAGTTAATCACTCAGAAAGAGAGCAATTTGAGATGATGCATGGATGGACAATAAAGAAAATGGAGACTGAGGACCAAACTCTTGTTCAAGATTGTAGCCCAGAAAATTTGGACCCTGCTCCAATTCAAGATGAATATGCACCTGTCATATTTTCTCAAGAAACAGTCGCTCATATAGTTTCAATCGACATGATGTCTGGAAAAGAAGATCGTGAGAACATATTGCGAGCTAGAGCTTCTGGAAAGGGAGTGCTTACATCTCCTTTTAAGCTTTTGAAATCTAATCACCTTGGAGTTGTCCTCACATTTGCTGTCTATAACACTGACCTCCCACCAAATGCTACTCCGGAGCAACGTATTGAAGCTACTGTTGGTTATCTAGGTGCATCTTATGATATCCCCTCACTGGTGGAAAAGCTTCTGCATCAGCTTGCTAGCAAGCAAACAATTGTTGTGAATGTTTATGATACGACCAATGATTCTGCTCCCATCAACATGTATGGTTCTGATTTTACCGACACTGGGCTACTGCATATTAGTAAACTTGATTTTGGGGATCCATTAAGAAGGCATGAGATGCATTGCAGATTCAAGCATAAACCTCCACCTCCTTGGACAGCTATCAATTCATCAGTAGGCGTCCTAATCATTACCTTGCTGGTTGGCCATATTTTTCATGCAGCCATAAGTCGGATTGCAAAAGTGGAGAATGACTATCACAAGATGATGAGGCTTAAAAGTCGTGCCGAAGCTGCTGATGTGGCAAAATCACAGTTTCTGGCGACAGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGCATGCTGAAATTACTGATGGACACTAACCTTGATTCGAATCAACTGGATTTTGCCCAGACTGCCCACGAGAGTGGAAAAGATCTGATATCACTTATAAATAAGGTTCTTGATCAAGCTAAGATAGAATCAGGAAGGCTTGAACTTGAATCTGTACCTTTCGATCTGCGTGCTATACTTGATAATGTTCTCTCACCTTTTTCCCTCAAATCCAATGATAAGGGAATTGAGTTGGCTGTTTATGTCTCTGATTTGGTGCCTGAAGTTGTCATCGGTGACCCTGGACGCTTTCGTCAAATAATTACTCATCTTGTTGGAAATTCAGTCAAGTTTACTCATAAAAAGGGACACATATTAGTCTCAGTGCATCTGGCTGATGAAGTGAGAGGCCCAGTTAATTTTATGGACATTGTGCTTAAACAAGGCACAAATTTAGTTGGAGATACATCAAACAATAGTTGTACAACATTTAGTGGGTTACCTGTGGTGGATAGATGGAAAAGCTGGGAGGATTTCAAAAAGTACAGCAGGACGGATGCGGTGGAGGAACCCAAAATGATTAGAATACTCGTGACTGTTGAGGATACAGGTGTAGGAATTCCCCAAGAAGCTCAAAGCCGAATATTCACTCCTTTTATGCAGGCTGATAGTTCCACTTCTCGGACGTATGGTGGCACTGGAATAGGGTTGAGTATTAGCAAATGTTTGGTGGATCTCATGGATGGGGAGATTGGGTTTGTGAGTGAGCCTGGTATAGGTAGCACATTTTCATTTACGGTTTCTTTTCAGAAAGGGGAAATAAGTTTTCTGGATACCAGACGGCTGCAGTATGATCTGGGTATTGTGGAGTTCCAGGGGCTAAGAGCACTAATAATTGATAATAGTTGCATTCGAGCAGAGGTCACAAGATATCATCTGCAGAGGTTGGGGATTTCTGTTGATATAGCTCTGAGTGCAGAATCTGCTTATCAATATCTATCCAATACTTCCAACACAAGAGCATCGACACAATTGTTGGCCATGATTCTTATAGACGAAGACATTTGGGACAAGAAAGTGGGGCTCAAGTTCCATCTTTTGTTTAAAGAGCATGTGGATAAAAGTGTGACAAATGTCCAGTTGAATACTCCAAAGCTCTTTCTCTTGGCAACTCCCATTAGCTCCAATGAGCAAAATGAACTTAAATCTTCCAGTCATGTAAATAATGTTTTAATTAAACCTCTTCAGTTAAACATGTTGGTCAGTTGCTTCCGCGATGCCTTTGGGATCGAGAAGAGGAATCAAGTAATAATTAAAAGACCATCTACTCTTAAGAATCTGCTGAAAGAAAAACATATTTTGGTTGTGGATGACAATGCGGTAAACAGAAGGGTGGCAGAAGGTGCCCTAAAGAAATATGGAGCAGTTGTAACTTGTGTAAACAGTGGAAATGATGCTGTGGCTCTCCTCAACCCTCCACACAACTTTGATGCTTGCTTCATGGACCTCCAGATGCCTGAGATGGATGGGTATGAAGCTACAAGACAGGTCCGTGCTGTAGAAACTGGGGTGAATGCGATAATTACATCAGGACAAATGTCAACTGTGGACAATAAGGTCCATTGGCACACGCCAATATTCGCTATGACGGCAGATTTAATTCAGGCTATGAATGAAGAGTGCCTGAAGTGTGGGATGGATGGTTATGTAGCTAAGCCATTTGAAGAAGAGCAACTTTATTCAGCTCTAGCATGCTTTTTTGAGACTAATTGA 3789 41.51 MWRGCSGGAGVFLKLSRCLLGMSLSCNFSTSNGKFPAGFKLKKAKEHLCFLNSTGKWKKKLLYLWIFAVVLLVLSSWFSLRSYNVNSGTKQKTSNLFHEETRTLLRHFNVSKNQLQALASLLSESDRMSSIGCTNDFGSDKSQLDGIACALRLLYWEQDLHKQYVWVEESAGSNVGQCPILTEIPENSDQLFSEDITVPFATDLSVSLLSTGHQLCGKIIEQVGVLRYLLSKHWKSFCSLLIGCFWVLLGVIVFQKISGFHLKLWNKKHPKPNQPLVHQQWVLLRRKQHQQVKDSPKGAGKWRKVLLRIFIVVGIIGSIWLFWYLNQTTILRREETLANMCDERARMLQDQFNVSMNHVHALAVLTSTFHHGKQPSAIDQKTFGEYTERTSFERPLTSGVAYALKVNHSEREQFEMMHGWTIKKMETEDQTLVQDCSPENLDPAPIQDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPNATPEQRIEATVGYLGASYDIPSLVEKLLHQLASKQTIVVNVYDTTNDSAPINMYGSDFTDTGLLHISKLDFGDPLRRHEMHCRFKHKPPPPWTAINSSVGVLIITLLVGHIFHAAISRIAKVENDYHKMMRLKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKLLMDTNLDSNQLDFAQTAHESGKDLISLINKVLDQAKIESGRLELESVPFDLRAILDNVLSPFSLKSNDKGIELAVYVSDLVPEVVIGDPGRFRQIITHLVGNSVKFTHKKGHILVSVHLADEVRGPVNFMDIVLKQGTNLVGDTSNNSCTTFSGLPVVDRWKSWEDFKKYSRTDAVEEPKMIRILVTVEDTGVGIPQEAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMDGEIGFVSEPGIGSTFSFTVSFQKGEISFLDTRRLQYDLGIVEFQGLRALIIDNSCIRAEVTRYHLQRLGISVDIALSAESAYQYLSNTSNTRASTQLLAMILIDEDIWDKKVGLKFHLLFKEHVDKSVTNVQLNTPKLFLLATPISSNEQNELKSSSHVNNVLIKPLQLNMLVSCFRDAFGIEKRNQVIIKRPSTLKNLLKEKHILVVDDNAVNRRVAEGALKKYGAVVTCVNSGNDAVALLNPPHNFDACFMDLQMPEMDGYEATRQVRAVETGVNAIITSGQMSTVDNKVHWHTPIFAMTADLIQAMNEECLKCGMDGYVAKPFEEEQLYSALACFFETN 1262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3532040 3541607 + Hsped.08g03950.1 Hepe08g0395 576367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0395 1262 SMART HKATPase_4 771 943 IPR003594 -
Hepe08g0395 1262 FunFam Histidine kinase 4 378 605 - -
Hepe08g0395 1262 SUPERFAMILY CheY-like 1121 1256 IPR011006 -
Hepe08g0395 1262 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 867 941 IPR003594 -
Hepe08g0395 1262 SMART REC_2 1123 1255 IPR001789 GO:0000160(InterPro)
Hepe08g0395 1262 Pfam Response regulator receiver domain 1125 1255 IPR001789 GO:0000160(InterPro)
Hepe08g0395 1262 SMART HisKA_10 659 724 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe08g0395 1262 ProSiteProfiles Response regulatory domain profile. 1124 1259 IPR001789 GO:0000160(InterPro)
Hepe08g0395 1262 Gene3D - 1117 1262 - -
Hepe08g0395 1262 Pfam CHASE domain 377 571 IPR006189 -
Hepe08g0395 1262 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 713 939 IPR036890 -
Hepe08g0395 1262 CDD REC_hyHK_CKI1_RcsC-like 1125 1255 - -
Hepe08g0395 1262 Gene3D - 628 722 - -
Hepe08g0395 1262 Gene3D - 86 127 - -
Hepe08g0395 1262 Gene3D - 325 377 - -
Hepe08g0395 1262 ProSiteProfiles Response regulatory domain profile. 967 1100 IPR001789 GO:0000160(InterPro)
Hepe08g0395 1262 SMART CHASE_2 374 573 IPR006189 -
Hepe08g0395 1262 Pfam His Kinase A (phospho-acceptor) domain 659 724 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe08g0395 1262 CDD HATPase_EvgS-ArcB-TorS-like 776 939 - -
Hepe08g0395 1262 CDD HisKA 659 720 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe08g0395 1262 ProSiteProfiles Histidine kinase domain profile. 666 943 IPR005467 -
Hepe08g0395 1262 FunFam Histidine kinase 4 631 722 - -
Hepe08g0395 1262 Gene3D - 723 945 IPR036890 -
Hepe08g0395 1262 ProSiteProfiles CHASE domain profile. 374 598 IPR006189 -
Hepe08g0395 1262 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 646 725 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe08g0395 1262 PRINTS Bacterial sensor protein C-terminal signature 868 882 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe08g0395 1262 PRINTS Bacterial sensor protein C-terminal signature 927 940 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe08g0395 1262 PRINTS Bacterial sensor protein C-terminal signature 903 921 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe08g0395 1262 PRINTS Bacterial sensor protein C-terminal signature 886 896 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe08g0395 1262 Gene3D CHASE domain 378 605 IPR042240 -
Hepe08g0395 1262 SUPERFAMILY CheY-like 962 1100 IPR011006 -
Hepe08g0395 1262 PANTHER TWO-COMPONENT HISTIDINE KINASE 301 1257 IPR050956 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2600 Hepe-Chr2:73208730 Hepe08g0395 Hepe-Chr8:3532040 0.0 dispersed
Hepe03g1107 Hepe-Chr3:63614763 Hepe08g0395 Hepe-Chr8:3532040 0.0 dispersed
Hepe06g0917 Hepe-Chr6:56660653 Hepe08g0395 Hepe-Chr8:3532040 2.78e-37 dispersed
Hepe08g0395 Hepe-Chr8:3532040 Hepe08g2256 Hepe-Chr8:62305622 1.17e-25 dispersed
Hepe01g1937 Hepe-Chr1:84207514 Hepe08g0395 Hepe-Chr8:3532040 5.33e-47 transposed
Hepe02g0293 Hepe-Chr2:2836260 Hepe08g0395 Hepe-Chr8:3532040 0.0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56101 PF03924 CHASE 4.10E-35 CL0165 Hepe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0395 K14489 - csv:101221294 2210.26