Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0397 ATGCAAGCTTCTCAGCTTCATAGAGATCAACATATGTCGAAGAGACTATGTTATCAGCCACTTCAAGGAGTGGATGCCTACTGTTTCTCTCAATTTCAAACTCTAGGTCGCCAATTATATGCCAGTGCTGGCAACCAAAGAGCTCAGTTCAATGTTCAAGACATCGGTGATCGATACTGCACTCTGGAGTCGTCCTCGGGAGGCCACGGCTATTCAACTCACAACTCAACGTTGACCGTCACTTCCTCACCTAATGGGAGTCCGGTATCACAACAGGATTCTCGTTCAAATCCTTCTGATCAGCATAATTCCCCTGACAATACATATGGCTCCCCAGTAAGCGGATCCAGCATTACAGATGATATTAGTGACTTTAGGCACAAACTACAGGAATTGGAAACCGTGATGCTCGGCCCTGATTCTGATATTATCGACAGTTTTGATAGTATCTATCAGGAGGGAACAGTCAATCCGGAGATGGAAAGTTGGGGACAAGTGATGGATGCTATCACTAAAGGAAACTTAAAAAAGATCCTTATAGCTTGTGCTAAAGCAGTATCAGATAATGATGTGTTGATGGCACAATGGCTTATGGATGAATTGCGTAAGGTGGTGTCTGTTCGTGGTGAACCAATGCAGAGGTTGGGAGCGTATATGCTGGAGGGGCTGGTTGCACGATTAGCCTCCTCGGGCAGTTGCATCTATAAATCTTTGAGATGCAAGGAACCAGCAAGTGTTGAGCTCCTCTCGTATATGCACCTTCTTTACGAGGTTTGCCCGTACTTCAAGTTCGGATACATGTCTGCAAATGGTGCCATTGCAGAAGCCATGAAAGATGAAGATAGAGTTCACATCATTGATTTCCAAATTTCTCAGGGTACTCAGTGGATCACTTTGATTCAAGCTTTTGCAGGCAGGCCCGGTGGACCACCTCACATTCGTATAACCGGTATAGATGATCCTGCATCAGCTTATGCTCGTGGAGGCGGGCTAGATATCGTTGGGAAGAGGCTTTCCAAGTTAGCAAAGTTGTTTAATGTGCCGTTTGAGTTTCAGTCTGCTTCCATTTCTGGCTGCGATGTTCAGCAAAAAAATCTAGGCATTCGACGAGGGGAGGCTTTAGCAGTGAATTTTGCGTTCATGCTACACCATATGTCAGATGAGAGCGTAAGCACCGAAAACCATCGAGATAGGCTATTGAGGCTGGTTAAGGGTCTGTCTCCAAAGGTAGTGACCCTTGTTGAACAAGAATCCAACACAAACACTGCTGCCTTCTTTCCCCGGTTCATCGAGACGCTGGATTATTACAACGCCATGTTTGAATCAATCGACGTTACTCTTCCAAGACAGCACAAGGAGCGTATTAACATCGAGCAGCATTGTCTAGCAAGGGAAGTTGTCAACATACTAGCATGTGAAGGGGCCGAGAGAGTGGAACGACACGAGCTACTAGGAAAGTGGAGACTACGATTCGCAATGGCAGGATTCACTCCTTACCCGTTAAGCTCTTTGGTGAATGCTACCATCAAAACGTTATTAGATAACTATTCTAACAGGTATAGGCTTGAAGAGAGAGAAGGGTGTCTGTATCTAGGCTGGATGGATAGGGATTTGGTTGCTTCTTGTGCATGGAAGTGA 1638 45.54 MQASQLHRDQHMSKRLCYQPLQGVDAYCFSQFQTLGRQLYASAGNQRAQFNVQDIGDRYCTLESSSGGHGYSTHNSTLTVTSSPNGSPVSQQDSRSNPSDQHNSPDNTYGSPVSGSSITDDISDFRHKLQELETVMLGPDSDIIDSFDSIYQEGTVNPEMESWGQVMDAITKGNLKKILIACAKAVSDNDVLMAQWLMDELRKVVSVRGEPMQRLGAYMLEGLVARLASSGSCIYKSLRCKEPASVELLSYMHLLYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFAGRPGGPPHIRITGIDDPASAYARGGGLDIVGKRLSKLAKLFNVPFEFQSASISGCDVQQKNLGIRRGEALAVNFAFMLHHMSDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFFPRFIETLDYYNAMFESIDVTLPRQHKERINIEQHCLAREVVNILACEGAERVERHELLGKWRLRFAMAGFTPYPLSSLVNATIKTLLDNYSNRYRLEEREGCLYLGWMDRDLVASCAWK 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3565298 3568347 + Hsped.08g03970.1 Hepe08g0397 576369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0397 545 MobiDBLite consensus disorder prediction 65 117 - -
Hepe08g0397 545 Pfam GRAS domain family 175 545 IPR005202 -
Hepe08g0397 545 ProSiteProfiles GRAS family profile. 166 545 IPR005202 -
Hepe08g0397 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 149 544 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0168 Hepe-Chr5:2073651 Hepe08g0397 Hepe-Chr8:3565298 6.11e-69 dispersed
Hepe06g0540 Hepe-Chr6:30762455 Hepe08g0397 Hepe-Chr8:3565298 7.53e-222 dispersed
Hepe08g0397 Hepe-Chr8:3565298 Hepe10g1981 Hepe-Chr10:56869049 2.71e-143 dispersed
Hepe01g1006 Hepe-Chr1:74696412 Hepe08g0397 Hepe-Chr8:3565298 3.96e-66 transposed
Hepe06g0670 Hepe-Chr6:50468948 Hepe08g0397 Hepe-Chr8:3565298 1.17e-72 transposed
Hepe09g1143 Hepe-Chr9:13336648 Hepe08g0397 Hepe-Chr8:3565298 2.03e-58 transposed
Hepe04g1711 Hepe-Chr4:72209398 Hepe08g0397 Hepe-Chr8:3565298 1.15e-199 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56102 PF03514 GRAS 2.20E-136 CL0063 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0397 K27748 - csv:101221914 1014.22