Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0398 ATGGATTACGCGCCACGTATAAAAGCAGATTCGTCCTGCCGCCTACACTTGACGAAAGAAAAACGAACTGAACGGAACACAGAGAGAGAGAGAGAAGTTTTTTTCTCGCTCCGTTTCTTCGGAGATTTTCCGTCCGGCATCACCTCCAAGATGCCAGCTGAAAATTCAACTCGATTTGATCGAGATGCAGAGCCTTTTGTTGAGGTCGATCCAACTGGAAGGTTCGGACGATATGATGATCTTCTTGGGTCTGGAGCAGTGAAGAGAGTTTATAGGGGATTTGATCAGGAGGAAGGTATAGAGGTTGCTTGGAATCAGGTTCGATTGAGAAATTTTAGTGGGGATCCAGTGTTCATCAACCGCTTGAGATCTGAGGTTCAGCTGCTGAGCACGTTAAACAACAAATATATCATTGTTTGTTACAGTGTTTGGAATGATGATGAGCGTAATACGTTGAATTTCATTACCGAGGTGTGCACATCAGGAAATCTGAGGGATTATCGTAAGAAGCATCGACATGTGTCAATTAAGGCCTTGAAGAAGTGGTCAAAGCAAGTACTCGAGGGATTGGATTATCTTCATACTCACGAGCCTTGCATTATTCACAGAGATCTCAACTGCAGTAACATATTTGTCAATGGGAACATTGGCCAGGTTAAAATAGGTGATCTAGGTTTTGCAGCTATAGTTGGCAGGAGTCATGCTGCACATTCAATCATAGGCACACCAGAGTATATGGCACCAGAACTGTACGAGGAAGATTACACGGAGATGGTGGATATATACTCCTTTGCGTTGTGTTTGCTCGAGATGGTTACAATGGAGATACCATACAGTGAATGTGATAGTGTTGCCAAGATATACAAGAAGGTGACAACTGGGATAAAGCCCCAAGCATTAAAGAAAGTGACTGATGATGAAGTCAGGGCTTTCATTGAGAAGAGCATTGGAACACCAAGGGCAAGGCCTTCCGCTTCTGAACTTCTCAAGGATCCCTTCTTCGACGAAGTCAGGGATGAAGAGTCTGAACAGAATTATTGA 1041 43.71 MDYAPRIKADSSCRLHLTKEKRTERNTEREREVFFSLRFFGDFPSGITSKMPAENSTRFDRDAEPFVEVDPTGRFGRYDDLLGSGAVKRVYRGFDQEEGIEVAWNQVRLRNFSGDPVFINRLRSEVQLLSTLNNKYIIVCYSVWNDDERNTLNFITEVCTSGNLRDYRKKHRHVSIKALKKWSKQVLEGLDYLHTHEPCIIHRDLNCSNIFVNGNIGQVKIGDLGFAAIVGRSHAAHSIIGTPEYMAPELYEEDYTEMVDIYSFALCLLEMVTMEIPYSECDSVAKIYKKVTTGIKPQALKKVTDDEVRAFIEKSIGTPRARPSASELLKDPFFDEVRDEESEQNY 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3570876 3573484 + Hsped.08g03980.1 Hepe08g0398 576370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0398 346 MobiDBLite consensus disorder prediction 329 346 - -
Hepe08g0398 346 FunFam probable serine/threonine-protein kinase WNK9 159 340 - -
Hepe08g0398 346 Gene3D Transferase(Phosphotransferase) domain 1 159 340 - -
Hepe08g0398 346 Gene3D Phosphorylase Kinase; domain 1 60 157 - -
Hepe08g0398 346 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 62 339 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Hepe08g0398 346 Pfam Protein kinase domain 80 334 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g0398 346 ProSiteProfiles Protein kinase domain profile. 76 334 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g0398 346 SUPERFAMILY Protein kinase-like (PK-like) 69 335 IPR011009 -
Hepe08g0398 346 FunFam Probable serine/threonine-protein kinase WNK1 61 157 - -
Hepe08g0398 346 MobiDBLite consensus disorder prediction 319 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0398 Hepe-Chr8:3570876 Hepe09g1530 Hepe-Chr9:40128449 1.31e-105 dispersed
Hepe08g0398 Hepe-Chr8:3570876 Hepe06g0543 Hepe-Chr6:31112616 5.67e-153 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73023 PF00069 Pkinase 6.80E-48 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0398 K08867 - csv:101222153 573.933