Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0412 ATGGCAGAAACAGATAACATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGTAAGAATGAAGCAGATGATGAGAAGCGTGAGCTTGTGTTCAAGGAGGATGGTCAGGAGTATGCACAAGTTCTTAGAATGTTGGGAAACGGTCGGTGTGAGGCGATGTGCATCGATGGGACGAAGCGTCTTTGCCATATTCGAGGCAAGATGCACAAGAAGGTCTGGATTGCAGCTGGTGATATAGTACTTGTTGGTCTTCGCGACTATCAGGATGATAAAGCTGATGTTATCCTCAAATATATGCCTGATGAAGCAAGGCTGTTGAAGGCATATGGTGAGCTTCCTGAGAACACCCGTCTCAATGAGGGTATCGCTGGTGGTATTGACGATGAGGATGAAAATGTGGCTGATGATTATCTTGAGTTTGAAGATGAAGATATTGATAAGATTTAG 456 44.52 MAETDNMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGGIDDEDENVADDYLEFEDEDIDKI 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3671443 3672396 - Hsped.08g04120.1 Hepe08g0412 576384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0412 151 MobiDBLite consensus disorder prediction 1 31 - -
Hepe08g0412 151 Hamap Translation initiation factor 1A [eif1a]. 22 116 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Hepe08g0412 151 Gene3D - 8 151 IPR012340 -
Hepe08g0412 151 Pfam Translation initiation factor 1A / IF-1 38 99 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Hepe08g0412 151 ProSitePatterns Eukaryotic initiation factor 1A signature. 47 69 IPR018104 GO:0003743(InterPro)|GO:0006413(InterPro)
Hepe08g0412 151 PANTHER EIF-1A 7 151 IPR001253 GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005737(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)
Hepe08g0412 151 SUPERFAMILY Nucleic acid-binding proteins 8 150 IPR012340 -
Hepe08g0412 151 CDD S1_IF1A 39 115 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Hepe08g0412 151 SMART eIF1neu4 34 116 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Hepe08g0412 151 NCBIfam translation initiation factor eIF-1A 20 116 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Hepe08g0412 151 ProSiteProfiles S1 domain IF1 type profile. 28 102 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Hepe08g0412 151 FunFam Eukaryotic translation initiation factor 1A 8 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1235 Hepe-Chr5:59277457 Hepe08g0412 Hepe-Chr8:3671443 4.82e-98 transposed
Hepe02g0272 Hepe-Chr2:2661534 Hepe08g0412 Hepe-Chr8:3671443 2.27e-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0412 K03236 - vvi:100252402 276.944