Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0425 ATGGGCGACCATGAATTCTCAAACTGTTTTCTCCAAATCCCTCTCGCCAAGAAGAAGAGAAACCTCCCCGGAACTCCAGATCCGGAAGCGGAAGTGATAGCGTTGTCGCCGAAGACACTGATGGCGACGAATAGGTTCGTGTGCGAAATATGTGGGAAAGGGTTTCAAAGAGACCAAAACTTGCAGCTGCATAGGCGAGGACATAACCTTCCATGGAAGCTGAAGCAAAGAAGTAGCAAAGAGCCAAGGAAGAGAGTGTATGTGTGCCCTGAGAAGAGCTGTGTGCATCACCATGCATCCAGGGCTCTGGGAGACCTCACAGGGATAAAGAAGCACTTTTGTAGAAAGCACGGGGAGAAGAAGTGGAAGTGCGACAAATGCTCTAAGAGATACGCTGTGCAATCTGATTGGAAAGCACACTCCAAAACTTGTGGCACTAGAGAGTACAAATGTGATTGCGGGACTCTTTTTTCCAGGAGAGATAGCTTCATAACTCACAGGGCATTCTGCGAAGCGTTGGCGGAAGAAACAGCAAGAGTAAACGCAAGCACAACAATAAGCAACGCCATGGCCGCCGCCGCCGCCGGCAATTTCAATTACAATTTCATGGGCGGCGGAGGCAGAGAATCATCAGCAATATTGAACCATGAAATCGGAGCAGGGTTAATGTATTATGATAACCCACTAGCTGATTATAATTCGAATTGGGTATTTGGAACAACAGAGATTAACAACGGTGGCAGTGGTGTTTGTTCACTGTACAGCCACCAATTACAGCAAGTGAGTCAAACCCAGATGCCAAATATGTCAGCCACTGCTTTGTTGCAAAAAGCTGCTCAAATTGGACCAATAATTTCCAGCTCCTCCGACGGATTTACGACTACTACACTTCAAAATCAAATTAATAATTGTGTCGTGGAGATTGAGAATGAGAATAACAATGATATGTACACTGCAAAACGGCGTCGTACTACGCAGAGTGAATCAGGAGGAAGCCACACAAGAGATTTTCTTGGAGTTGGTGCCCACACTACTATTTGCCACACCTCTAATCCATCAATCAACGGTTGGATTTAA 1077 45.96 MGDHEFSNCFLQIPLAKKKRNLPGTPDPEAEVIALSPKTLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPRKRVYVCPEKSCVHHHASRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCEALAEETARVNASTTISNAMAAAAAGNFNYNFMGGGGRESSAILNHEIGAGLMYYDNPLADYNSNWVFGTTEINNGGSGVCSLYSHQLQQVSQTQMPNMSATALLQKAAQIGPIISSSSDGFTTTTLQNQINNCVVEIENENNNDMYTAKRRRTTQSESGGSHTRDFLGVGAHTTICHTSNPSINGWI 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3743018 3744509 - Hsped.08g04250.1 Hepe08g0425 576397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0425 358 MobiDBLite consensus disorder prediction 315 335 - -
Hepe08g0425 358 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Hepe08g0425 358 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 343 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe08g0425 358 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 148 187 - -
Hepe08g0425 358 FunFam protein indeterminate-domain 5, chloroplastic-like 100 179 - -
Hepe08g0425 358 Pfam Zinc finger, C2H2 type 46 68 IPR013087 -
Hepe08g0425 358 MobiDBLite consensus disorder prediction 315 329 - -
Hepe08g0425 358 Gene3D Classic Zinc Finger 42 69 - -
Hepe08g0425 358 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 121 145 - -
Hepe08g0425 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 68 IPR013087 -
Hepe08g0425 358 Gene3D Classic Zinc Finger 79 170 - -
Hepe08g0425 358 SUPERFAMILY beta-beta-alpha zinc fingers 45 142 IPR036236 -
Hepe08g0425 358 FunFam protein indeterminate-domain 12-like 25 93 - -
Hepe08g0425 358 SMART c2h2final6 46 68 IPR013087 -
Hepe08g0425 358 SMART c2h2final6 122 142 IPR013087 -
Hepe08g0425 358 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 83 117 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0251 Hepe-Chr5:2990693 Hepe08g0425 Hepe-Chr8:3743018 2.19e-101 dispersed
Hepe07g2566 Hepe-Chr7:70116971 Hepe08g0425 Hepe-Chr8:3743018 1.29e-70 dispersed
Hepe08g0425 Hepe-Chr8:3743018 Hepe10g1107 Hepe-Chr10:43772864 8.26e-104 dispersed
Hepe03g2035 Hepe-Chr3:77745861 Hepe08g0425 Hepe-Chr8:3743018 4.22e-105 transposed
Hepe02g0263 Hepe-Chr2:2594541 Hepe08g0425 Hepe-Chr8:3743018 4.29e-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56106 None None None None Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0425 K25870 - csv:101211656 461.455