Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe08g0425 | ATGGGCGACCATGAATTCTCAAACTGTTTTCTCCAAATCCCTCTCGCCAAGAAGAAGAGAAACCTCCCCGGAACTCCAGATCCGGAAGCGGAAGTGATAGCGTTGTCGCCGAAGACACTGATGGCGACGAATAGGTTCGTGTGCGAAATATGTGGGAAAGGGTTTCAAAGAGACCAAAACTTGCAGCTGCATAGGCGAGGACATAACCTTCCATGGAAGCTGAAGCAAAGAAGTAGCAAAGAGCCAAGGAAGAGAGTGTATGTGTGCCCTGAGAAGAGCTGTGTGCATCACCATGCATCCAGGGCTCTGGGAGACCTCACAGGGATAAAGAAGCACTTTTGTAGAAAGCACGGGGAGAAGAAGTGGAAGTGCGACAAATGCTCTAAGAGATACGCTGTGCAATCTGATTGGAAAGCACACTCCAAAACTTGTGGCACTAGAGAGTACAAATGTGATTGCGGGACTCTTTTTTCCAGGAGAGATAGCTTCATAACTCACAGGGCATTCTGCGAAGCGTTGGCGGAAGAAACAGCAAGAGTAAACGCAAGCACAACAATAAGCAACGCCATGGCCGCCGCCGCCGCCGGCAATTTCAATTACAATTTCATGGGCGGCGGAGGCAGAGAATCATCAGCAATATTGAACCATGAAATCGGAGCAGGGTTAATGTATTATGATAACCCACTAGCTGATTATAATTCGAATTGGGTATTTGGAACAACAGAGATTAACAACGGTGGCAGTGGTGTTTGTTCACTGTACAGCCACCAATTACAGCAAGTGAGTCAAACCCAGATGCCAAATATGTCAGCCACTGCTTTGTTGCAAAAAGCTGCTCAAATTGGACCAATAATTTCCAGCTCCTCCGACGGATTTACGACTACTACACTTCAAAATCAAATTAATAATTGTGTCGTGGAGATTGAGAATGAGAATAACAATGATATGTACACTGCAAAACGGCGTCGTACTACGCAGAGTGAATCAGGAGGAAGCCACACAAGAGATTTTCTTGGAGTTGGTGCCCACACTACTATTTGCCACACCTCTAATCCATCAATCAACGGTTGGATTTAA | 1077 | 45.96 | MGDHEFSNCFLQIPLAKKKRNLPGTPDPEAEVIALSPKTLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPRKRVYVCPEKSCVHHHASRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCEALAEETARVNASTTISNAMAAAAAGNFNYNFMGGGGRESSAILNHEIGAGLMYYDNPLADYNSNWVFGTTEINNGGSGVCSLYSHQLQQVSQTQMPNMSATALLQKAAQIGPIISSSSDGFTTTTLQNQINNCVVEIENENNNDMYTAKRRRTTQSESGGSHTRDFLGVGAHTTICHTSNPSINGWI | 358 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 3743018 | 3744509 | - | Hsped.08g04250.1 | Hepe08g0425 | 576397 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe08g0425 | 358 | MobiDBLite | consensus disorder prediction | 315 | 335 | - | - | |
Hepe08g0425 | 358 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 48 | 68 | IPR013087 | - | |
Hepe08g0425 | 358 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 16 | 343 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Hepe08g0425 | 358 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 148 | 187 | - | - | |
Hepe08g0425 | 358 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 100 | 179 | - | - | |
Hepe08g0425 | 358 | Pfam | Zinc finger, C2H2 type | 46 | 68 | IPR013087 | - | |
Hepe08g0425 | 358 | MobiDBLite | consensus disorder prediction | 315 | 329 | - | - | |
Hepe08g0425 | 358 | Gene3D | Classic Zinc Finger | 42 | 69 | - | - | |
Hepe08g0425 | 358 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 121 | 145 | - | - | |
Hepe08g0425 | 358 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 46 | 68 | IPR013087 | - | |
Hepe08g0425 | 358 | Gene3D | Classic Zinc Finger | 79 | 170 | - | - | |
Hepe08g0425 | 358 | SUPERFAMILY | beta-beta-alpha zinc fingers | 45 | 142 | IPR036236 | - | |
Hepe08g0425 | 358 | FunFam | protein indeterminate-domain 12-like | 25 | 93 | - | - | |
Hepe08g0425 | 358 | SMART | c2h2final6 | 46 | 68 | IPR013087 | - | |
Hepe08g0425 | 358 | SMART | c2h2final6 | 122 | 142 | IPR013087 | - | |
Hepe08g0425 | 358 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 83 | 117 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe05g0251 | Hepe-Chr5:2990693 | Hepe08g0425 | Hepe-Chr8:3743018 | 2.19e-101 | dispersed | |
Hepe07g2566 | Hepe-Chr7:70116971 | Hepe08g0425 | Hepe-Chr8:3743018 | 1.29e-70 | dispersed | |
Hepe08g0425 | Hepe-Chr8:3743018 | Hepe10g1107 | Hepe-Chr10:43772864 | 8.26e-104 | dispersed | |
Hepe03g2035 | Hepe-Chr3:77745861 | Hepe08g0425 | Hepe-Chr8:3743018 | 4.22e-105 | transposed | |
Hepe02g0263 | Hepe-Chr2:2594541 | Hepe08g0425 | Hepe-Chr8:3743018 | 4.29e-119 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56106 | None | None | None | None | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe08g0425 | K25870 | - | csv:101211656 | 461.455 |