Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0428 ATGCCGAAGGGTTTGAAGAGCAAATGCCAGTCTACTTCTCATCAGCTTTTGAAAGAAAAAGCAAAGAACCGTGTTAATGACCTTCAAGGGATATTCACTAATCTTCAATCTGCAAGGAAGGAGAGTCGTACTACTGACATTGCTGTCTTGGAGGAGCAAGTCCATCAGATGCTCAGGGAGTGGAATGCTGAGCTTAATGAACCGTCACCTGCCTCTTCGTTTGTTGAGGGCAGTCTTGGATCATTTTCGCAAGAACTAGCCCGTCTTCTTGAGCATTGTGATGAGCAAGATGATGCAACTAGTACATTGGCTGAACCAAAGCCTGAACCTGATCTCCATTGCGTTCATGCCAGCATTGTGTCAAATTTTCAGCAGGATGGTTTTGGTATTTCGGAGCTCCAACAGCATAGTTTTCTTGGATTTGAAGAGTGCAAAGTCTCTACTCCAGTTCAACAAAATTATTCGTTTTACAAATCAGACATGGCTACTCAGTCTAATAGTCAAGATTTCAAATTAGATCAAAACTTTGTGCAAAACACAGTGGTCAGTACAGATGATATGTCTACTTTGGATTGCCATTTATTGGATTCACATCAAGAGTTCGACTATGGGGTTCTTATTGGCGCATATGATGCGGGAGACTTTAGTCAGGACACAAAGCCCGGCATTCTCCCAAATATCTCGCCCCCACCATCTGCTTTTATGGGGCCAATATGTGCTCTCTGGGATTGTTTCAGACCTGCTCAAGGATCTAAATGGTGCCAAGACTATTGCAGTAGTTGTCATTCTATGCTTGCAATAAATGAAGGCCTTCCAGGAATGACTCCAATATTGCGCCCTGGGGGCATTGGCTTAAAGGATGGCCCACTGTTTGCTGCGCTTCTTGCAAAGACACAGACCAAAGAAGTTGGAATACCAATATGTGATGGTGCTGCAACAACGAAATCTCCATGGAATGCTCCTGGTAAGCCTTTTATGTTGCTTTTAACTTTTTCTGTTTTCCTGGTTTAA 1011 43.22 MPKGLKSKCQSTSHQLLKEKAKNRVNDLQGIFTNLQSARKESRTTDIAVLEEQVHQMLREWNAELNEPSPASSFVEGSLGSFSQELARLLEHCDEQDDATSTLAEPKPEPDLHCVHASIVSNFQQDGFGISELQQHSFLGFEECKVSTPVQQNYSFYKSDMATQSNSQDFKLDQNFVQNTVVSTDDMSTLDCHLLDSHQEFDYGVLIGAYDAGDFSQDTKPGILPNISPPPSAFMGPICALWDCFRPAQGSKWCQDYCSSCHSMLAINEGLPGMTPILRPGGIGLKDGPLFAALLAKTQTKEVGIPICDGAATTKSPWNAPGKPFMLLLTFSVFLV 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3791082 3792932 + Hsped.08g04280.1 Hepe08g0428 576400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0428 336 Coils Coil 18 38 - -
Hepe08g0428 336 PANTHER TRANSCRIPTION FACTOR VOZ1 1 321 IPR039277 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0045893(PANTHER)|GO:0048578(InterPro)|GO:0048578(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0428 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1885 Hepe-Chr4:73802703 Hepe08g0428 Hepe-Chr8:3791082 4.90e-51 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe04g1885 . 3 361 VOZ-9 Transcription Factor Family AT1G28520 69.1 6.0e-143 504.6
Hepe08g0428 . 6 321 VOZ-9 Transcription Factor Family AT1G28520 51.3 6.8e-78 288.5
Hepe08g0429 . 19 163 VOZ-9 Transcription Factor Family AT1G28520 67.6 4.9e-52 202.6
Hepe04g1885 . 84 301 VOZ-9 Transcription Factor Family AT2G42400 69.7 1.4e-90 330.5
Hepe08g0429 . 18 140 VOZ-9 Transcription Factor Family AT2G42400 73.2 3.6e-49 193.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005492 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 5 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56107 None None None None Hepe TF