Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe08g0454 | ATGGACTGGACTAGAGGCCACGTCATCGGCCAGGGCTCTTCTGCCACCGTCTTCCTCGCTGCGGCTTCTCCCGGCGGGGACCTCTTCGCCGTCAAGTCTGCCGAGCTTTCACAGTCGCAATCTCTACAGAGAGAGCAACAGTTTCTTTCTTCTTTAGCCTCTCCGTATATTGTTTCTTATAGAGGCTGTGAGGTCCGTAGAGAACAGAGTGGGGCCCTGATGTTCAATCTTTTCCTCGAGTATTTGCCCAACGGTTCGCTCGCCGACGCAATTCGCCACCGTGGAGGGCGGCTCGATGAGGCGGCGATCGGAATTTACACAAGGCAGTTACTACAGGGACTACACTACATTCATTCAAAAGGCTTGGTGCATTGCGACATTAAATCCCGAAACGTTTTGATCGGCCGAGACGGCGGGGCTAAATTGGCTGATTTCGGATGCGCCAAGTGGGCCACCCAAACCGACCCAATCGGAGGCACGCCGCTATTTATGGCGCCGGAAGTGGCTCGCGGTGAGCAACAAGGGCTGGCTTCCGACATTTGGTCAATTGGGTGTACAGTCATCGAAATGGCCACCGACGGTGGCTCGCCGTGGTCCATTTCAAACGACGCCGACCCAATTTCCGCCCTGTACCGAATTGGGTATTCCGGCGAGTCGCCGGAAATTCCATCATTTCTATCCCACGAAGCGAAGGATTTTTTAGAGAAGTGCTTAAGGAGGAATCCGGAAGAGAGATGGACGACGAATCAGCTTCTGAATCACCCGTTTTTGGGGGAATTGAATTCCATTTCCACCTGGCGAAAGCAAATTCAAGAAGTCCAATCAGATTCTCCAACGAGTATTCTAGAACAGGGGATTTGGAGGTCAATTGAAGAAAGTGAGATTATAGAATCAAAAATATCAAGATCCAATTGTTTGGCGGCAGCAGCAGAGCAGATCCGACGGCTGTGGATGGTTTCAGGGGAGCCCAGATGGACGGAGGATGAGAATTGGATGACAATTAGAAAAGAAGTCGGTGATGAAAGCGAGTTGATTGGTGGGTCAGATTCAGAAGCGAAAGTGAAAGTGAAAGTGTGTAGTAATAATAATGGTTGGGGTGAGAAACAGAGAGATGATAGTGGCGGCAAAGAGTTGTTGGAATTGGAATTGGAATTCATAGATAAGCATAACAAGAATGTTAGTTGTAAAATTAGTAGGAATGATTTCGCAGACCATAGTTTTAGGAAGATTACTCTTGTACATAATTATAGTAATCATCTCTGTTTTCATACTAAATTTCTTCCTTTAATGCCATCTATATTATGA | 1305 | 47.82 | MDWTRGHVIGQGSSATVFLAAASPGGDLFAVKSAELSQSQSLQREQQFLSSLASPYIVSYRGCEVRREQSGALMFNLFLEYLPNGSLADAIRHRGGRLDEAAIGIYTRQLLQGLHYIHSKGLVHCDIKSRNVLIGRDGGAKLADFGCAKWATQTDPIGGTPLFMAPEVARGEQQGLASDIWSIGCTVIEMATDGGSPWSISNDADPISALYRIGYSGESPEIPSFLSHEAKDFLEKCLRRNPEERWTTNQLLNHPFLGELNSISTWRKQIQEVQSDSPTSILEQGIWRSIEESEIIESKISRSNCLAAAAEQIRRLWMVSGEPRWTEDENWMTIRKEVGDESELIGGSDSEAKVKVKVCSNNNGWGEKQRDDSGGKELLELELEFIDKHNKNVSCKISRNDFADHSFRKITLVHNYSNHLCFHTKFLPLMPSIL | 434 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 3987877 | 3989300 | + | Hsped.08g04540.1 | Hepe08g0454 | 576426 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe08g0454 | 434 | ProSiteProfiles | Protein kinase domain profile. | 3 | 257 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Hepe08g0454 | 434 | SUPERFAMILY | Protein kinase-like (PK-like) | 2 | 302 | IPR011009 | - | |
Hepe08g0454 | 434 | CDD | STKc_MAPKKK | 2 | 257 | - | - | |
Hepe08g0454 | 434 | SMART | serkin_6 | 3 | 257 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Hepe08g0454 | 434 | PRINTS | Tyrosine kinase catalytic domain signature | 116 | 134 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Hepe08g0454 | 434 | PRINTS | Tyrosine kinase catalytic domain signature | 79 | 92 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Hepe08g0454 | 434 | PRINTS | Tyrosine kinase catalytic domain signature | 178 | 200 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Hepe08g0454 | 434 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 32 | IPR017441 | GO:0005524(InterPro) | |
Hepe08g0454 | 434 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 336 | - | - | |
Hepe08g0454 | 434 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 122 | 134 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Hepe08g0454 | 434 | Pfam | Protein kinase domain | 4 | 257 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Hepe08g0454 | 434 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 2 | 257 | IPR052751 | GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe01g1260 | Hepe-Chr1:77888707 | Hepe08g0454 | Hepe-Chr8:3987877 | 6.30e-103 | dispersed | |
Hepe08g0454 | Hepe-Chr8:3987877 | Hepe10g1336 | Hepe-Chr10:49487216 | 3.61e-58 | dispersed | |
Hepe04g1250 | Hepe-Chr4:68007687 | Hepe08g0454 | Hepe-Chr8:3987877 | 1.88e-70 | transposed | |
Hepe02g0231 | Hepe-Chr2:2349997 | Hepe08g0454 | Hepe-Chr8:3987877 | 3.87e-126 | wgd | |
Hepe04g1749 | Hepe-Chr4:72521792 | Hepe08g0454 | Hepe-Chr8:3987877 | 2.59e-105 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73024 | PF00069 | Pkinase | 2.70E-54 | CL0016 | Hepe | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe08g0454 | K20716 | - | csv:101208274 | 541.191 |