Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0454 ATGGACTGGACTAGAGGCCACGTCATCGGCCAGGGCTCTTCTGCCACCGTCTTCCTCGCTGCGGCTTCTCCCGGCGGGGACCTCTTCGCCGTCAAGTCTGCCGAGCTTTCACAGTCGCAATCTCTACAGAGAGAGCAACAGTTTCTTTCTTCTTTAGCCTCTCCGTATATTGTTTCTTATAGAGGCTGTGAGGTCCGTAGAGAACAGAGTGGGGCCCTGATGTTCAATCTTTTCCTCGAGTATTTGCCCAACGGTTCGCTCGCCGACGCAATTCGCCACCGTGGAGGGCGGCTCGATGAGGCGGCGATCGGAATTTACACAAGGCAGTTACTACAGGGACTACACTACATTCATTCAAAAGGCTTGGTGCATTGCGACATTAAATCCCGAAACGTTTTGATCGGCCGAGACGGCGGGGCTAAATTGGCTGATTTCGGATGCGCCAAGTGGGCCACCCAAACCGACCCAATCGGAGGCACGCCGCTATTTATGGCGCCGGAAGTGGCTCGCGGTGAGCAACAAGGGCTGGCTTCCGACATTTGGTCAATTGGGTGTACAGTCATCGAAATGGCCACCGACGGTGGCTCGCCGTGGTCCATTTCAAACGACGCCGACCCAATTTCCGCCCTGTACCGAATTGGGTATTCCGGCGAGTCGCCGGAAATTCCATCATTTCTATCCCACGAAGCGAAGGATTTTTTAGAGAAGTGCTTAAGGAGGAATCCGGAAGAGAGATGGACGACGAATCAGCTTCTGAATCACCCGTTTTTGGGGGAATTGAATTCCATTTCCACCTGGCGAAAGCAAATTCAAGAAGTCCAATCAGATTCTCCAACGAGTATTCTAGAACAGGGGATTTGGAGGTCAATTGAAGAAAGTGAGATTATAGAATCAAAAATATCAAGATCCAATTGTTTGGCGGCAGCAGCAGAGCAGATCCGACGGCTGTGGATGGTTTCAGGGGAGCCCAGATGGACGGAGGATGAGAATTGGATGACAATTAGAAAAGAAGTCGGTGATGAAAGCGAGTTGATTGGTGGGTCAGATTCAGAAGCGAAAGTGAAAGTGAAAGTGTGTAGTAATAATAATGGTTGGGGTGAGAAACAGAGAGATGATAGTGGCGGCAAAGAGTTGTTGGAATTGGAATTGGAATTCATAGATAAGCATAACAAGAATGTTAGTTGTAAAATTAGTAGGAATGATTTCGCAGACCATAGTTTTAGGAAGATTACTCTTGTACATAATTATAGTAATCATCTCTGTTTTCATACTAAATTTCTTCCTTTAATGCCATCTATATTATGA 1305 47.82 MDWTRGHVIGQGSSATVFLAAASPGGDLFAVKSAELSQSQSLQREQQFLSSLASPYIVSYRGCEVRREQSGALMFNLFLEYLPNGSLADAIRHRGGRLDEAAIGIYTRQLLQGLHYIHSKGLVHCDIKSRNVLIGRDGGAKLADFGCAKWATQTDPIGGTPLFMAPEVARGEQQGLASDIWSIGCTVIEMATDGGSPWSISNDADPISALYRIGYSGESPEIPSFLSHEAKDFLEKCLRRNPEERWTTNQLLNHPFLGELNSISTWRKQIQEVQSDSPTSILEQGIWRSIEESEIIESKISRSNCLAAAAEQIRRLWMVSGEPRWTEDENWMTIRKEVGDESELIGGSDSEAKVKVKVCSNNNGWGEKQRDDSGGKELLELELEFIDKHNKNVSCKISRNDFADHSFRKITLVHNYSNHLCFHTKFLPLMPSIL 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3987877 3989300 + Hsped.08g04540.1 Hepe08g0454 576426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0454 434 ProSiteProfiles Protein kinase domain profile. 3 257 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g0454 434 SUPERFAMILY Protein kinase-like (PK-like) 2 302 IPR011009 -
Hepe08g0454 434 CDD STKc_MAPKKK 2 257 - -
Hepe08g0454 434 SMART serkin_6 3 257 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g0454 434 PRINTS Tyrosine kinase catalytic domain signature 116 134 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe08g0454 434 PRINTS Tyrosine kinase catalytic domain signature 79 92 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe08g0454 434 PRINTS Tyrosine kinase catalytic domain signature 178 200 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe08g0454 434 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524(InterPro)
Hepe08g0454 434 Gene3D Transferase(Phosphotransferase) domain 1 2 336 - -
Hepe08g0454 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe08g0454 434 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g0454 434 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 257 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1260 Hepe-Chr1:77888707 Hepe08g0454 Hepe-Chr8:3987877 6.30e-103 dispersed
Hepe08g0454 Hepe-Chr8:3987877 Hepe10g1336 Hepe-Chr10:49487216 3.61e-58 dispersed
Hepe04g1250 Hepe-Chr4:68007687 Hepe08g0454 Hepe-Chr8:3987877 1.88e-70 transposed
Hepe02g0231 Hepe-Chr2:2349997 Hepe08g0454 Hepe-Chr8:3987877 3.87e-126 wgd
Hepe04g1749 Hepe-Chr4:72521792 Hepe08g0454 Hepe-Chr8:3987877 2.59e-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73024 PF00069 Pkinase 2.70E-54 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0454 K20716 - csv:101208274 541.191