Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0469 ATGGCTTCGTTTTCTTTTACCGTCAATGGGCCTGCGGTTGTGAACATTGGTGCAGTTTTCACTTTTGATTCAGTTATAGGAAGAGTGGCGAAGGTGGCAATGGAAGCTGCAGTTTCGGATGTTAATGCAGATCCTTTCATTCTCAATGGAACAAAGCTGAATATGGTCATGGCAGATACACATTGTAATGTTCTCTTGGGTTCTATTGGAGCTTTCCAGGTTCTTGAGAAAGAGGTAGTAGCCATCGTTGGGCCTCAATCTTCAGTTGTAGCTCATATGGTACTACAGATTGCTAATAATCTCCAAGTGCCTCTTATATCATATGCTGCCACTGATCCAACTTTATCTGCTCTCCAATTCCCCTTTTTCCTACGGACTACTCAGAGTGACTCCTATCAAATGACTGCTATGGCAGAACTAATTGACTTTTATGAGTGGAAAGAGGTGATCACCATCTTTGTGGATGATGATTATGGTAGAAACGGAATATCCACTCTAAATGATGAACTTGACAAGAAGATGTTTAAAATTTCTTACAAAATACCCTTACCTTCTCAGTTTAATCTTATTGAAGTCACAGACATACTCAATAAATCCAAGTTGCTTGGTCCTCGTGTCTATGTTGTTCATGTCAATCCTGATCCCAGATTAAGTATCTTCAAAATAGCTCATCAGCTTAATATGATGACAAGTGATTATGTGTGGCTGGCAACAGATTGGCTTTCTACTACCTTAGATTCAATTCTGCCTGTGCACCAAACCTCTCTAAACATCCTTCAAGGAGTGGTTGTACTTCGACAACATACTCCTGAATCCAGCCAAAAAACAACATTATGGTCTCGGTTAAGGAAGATGTTGCCAGAAGGCTCCAGAAATTCTTCATTGAATGTCTATGCTCTTAGTGCCTATGATACCATTCAAGTAGTTGCACGTTCAATCGATAAGTTTCTTAATGAAGGCAGGAGCATTACCTTCTCAATGAAGAACAAGTTTCATGATTTAAATACTTCTAAAATGCCCTGGGGGAAGCTCAAAATATTTGATGATGGTGCTTTTCTTTTGAGCATATTGTTGCAGACAAACTTTACTGGTTTAAGTGGCCGGGTTGAGTTTAATTCAGATCGGAACATTGTCAGTAGAGGCTATGAGGTGATCAATATTGATCAGACTGGATTGCGAAGAGTTGGTTATTGGTCTAATATCACAGGCTTTACAATCCAATCACCAGAAACTCTGAAACAGAAACGAATTTGTTATACCCACCTGAACCAGACTCTTGGCAATGTTACCTGGCCTGGTGGAAAGACAGAAAGACCACGTGGATGGGTGATTGCAGACAATGAAAGACCATTAATAATTGGAGTGCCACTTAGAGTAAGTTTCATTGAATTTGTTACAGCAGTCAATGGAAGCCACAAAACCATTGAAGGATATTGTATCGATCTATTCAATGAAGCACGAAAGCTGGTCCCGTACGATGTTCCTTACAGATTTATACCTTTTGGAAATGGCTACTCCAATCCCAATTATAATGAACTTGTGAAGAACGTTGCGAATGGTTTATTTGATGCAGCTGTTGGAGATATTGCAATAGTAACCAATCGTACAAGGATTGTGGATTTTTCTCAGCCTTTTGCTTCTACAGGTCTTGTTATTGTGGCTCCAATAAAAAATTCAAAGTCAAGTGCTTGGGTGTTCCTTAAACCATTTACAGTAGAGATGTGGTGTGTTACCTCGGCATCCTTTTTTATGATTGGCGCAGTCATATGGATTCTTGAGCATCGAGTAAATGATGATTTCCGTGGTCCACCAAAGAGGCAGCTAGTGACAGTAATACTGTTCAGCTTCTCAACATTGTTTAAAACAAATCAGGAAGATACTGTAAGTCCACTTGGACGTATGGTAATGGTGGTGTGGCTTTTCTTATTGATGGTTATCACATCAAGCTATACAGCTAGTCTCACTTCAATCCTTACAGTTCAGCAGCTTTCATCTCCCATCAAAGGACTTGATGACTTGATTACTAGTGAACAGCCAATTGGCTACCAGGTAGGATCGTTTGCGTATAGCTATCTGACCGAGAGTCTTTACCTTCCACAATCAAGGCTTGTACCTCTAGGCTCTCCAGAAGAGTATGAATCAGCATTGCTAAAGGGGCCATTCAAAAAAGGAGGGGTGGCGGCTATTGTAGATGAACTTCCATATATGGAGTTATTCTTATCAGAGAAGAATGATTTCGGAATGATCGGGCAACCATTCACCAAGAGTGGATGGGGATTTGCTTTTCAGAGAGGATCTCCACTTGCAGTAGACATTTCAACTGCAATTCTAAAGCTTTCGGAGAATGGAAAGCTTCAGAAGATCCATCAGAAGTGGTTTTGCAAGATGGGTTGTCCTGGGGAGAGGAGAAGGAAATCTGAGGCTAACCAACTTCACTTGGTCAGCTTCTGGGGTCTATATCTCTTGTGCGGTTCCTTTTCAGTCGCTGCTCTTTTCATATTTTTGCTCCGCATAGTTCGACAATTTGCTCGCTACATACGGCAACAGAAGGAAGCTTCTCATGCAGAATTGGTATCATCAAATTCAAACTCAAGCTGGACTCAGGTTATACATAAGTTCATCAACTTTGTTGATGAGAAGGAAGAAGCCATCAAGAGACTTTTTCGAAAGCATGATACTCAGAATCAGACTAACTGA 2697 40.64 MASFSFTVNGPAVVNIGAVFTFDSVIGRVAKVAMEAAVSDVNADPFILNGTKLNMVMADTHCNVLLGSIGAFQVLEKEVVAIVGPQSSVVAHMVLQIANNLQVPLISYAATDPTLSALQFPFFLRTTQSDSYQMTAMAELIDFYEWKEVITIFVDDDYGRNGISTLNDELDKKMFKISYKIPLPSQFNLIEVTDILNKSKLLGPRVYVVHVNPDPRLSIFKIAHQLNMMTSDYVWLATDWLSTTLDSILPVHQTSLNILQGVVVLRQHTPESSQKTTLWSRLRKMLPEGSRNSSLNVYALSAYDTIQVVARSIDKFLNEGRSITFSMKNKFHDLNTSKMPWGKLKIFDDGAFLLSILLQTNFTGLSGRVEFNSDRNIVSRGYEVINIDQTGLRRVGYWSNITGFTIQSPETLKQKRICYTHLNQTLGNVTWPGGKTERPRGWVIADNERPLIIGVPLRVSFIEFVTAVNGSHKTIEGYCIDLFNEARKLVPYDVPYRFIPFGNGYSNPNYNELVKNVANGLFDAAVGDIAIVTNRTRIVDFSQPFASTGLVIVAPIKNSKSSAWVFLKPFTVEMWCVTSASFFMIGAVIWILEHRVNDDFRGPPKRQLVTVILFSFSTLFKTNQEDTVSPLGRMVMVVWLFLLMVITSSYTASLTSILTVQQLSSPIKGLDDLITSEQPIGYQVGSFAYSYLTESLYLPQSRLVPLGSPEEYESALLKGPFKKGGVAAIVDELPYMELFLSEKNDFGMIGQPFTKSGWGFAFQRGSPLAVDISTAILKLSENGKLQKIHQKWFCKMGCPGERRRKSEANQLHLVSFWGLYLLCGSFSVAALFIFLLRIVRQFARYIRQQKEASHAELVSSNSNSSWTQVIHKFINFVDEKEEAIKRLFRKHDTQNQTN 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4093183 4098842 + Hsped.08g04690.1 Hepe08g0469 576441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0469 898 Gene3D - 32 379 - -
Hepe08g0469 898 Gene3D - 460 562 - -
Hepe08g0469 898 CDD PBP1_GABAb_receptor_plant 15 405 IPR044440 -
Hepe08g0469 898 CDD GluR_Plant 449 793 - -
Hepe08g0469 898 FunFam Glutamate receptor 563 693 - -
Hepe08g0469 898 SUPERFAMILY Periplasmic binding protein-like I 11 443 IPR028082 -
Hepe08g0469 898 FunFam Glutamate receptor 129 285 - -
Hepe08g0469 898 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 14 862 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Hepe08g0469 898 Pfam Ligand-gated ion channel 572 824 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Hepe08g0469 898 Gene3D - 129 403 - -
Hepe08g0469 898 FunFam Glutamate receptor 446 563 - -
Hepe08g0469 898 SUPERFAMILY Periplasmic binding protein-like II 426 793 - -
Hepe08g0469 898 Gene3D - 563 695 - -
Hepe08g0469 898 SMART GluR_14 452 795 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Hepe08g0469 898 FunFam Glutamate receptor 689 797 - -
Hepe08g0469 898 Pfam Receptor family ligand binding region 31 388 IPR001828 -
Hepe08g0469 898 Gene3D - 740 800 - -
Hepe08g0469 898 PIRSF IGluLR_plant 2 898 IPR017103 -
Hepe08g0469 898 Pfam Ligated ion channel L-glutamate- and glycine-binding site 467 554 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0469 Hepe-Chr8:4093183 Hepe08g1459 Hepe-Chr8:17686919 4.44e-148 dispersed
Hepe08g0469 Hepe-Chr8:4093183 Hepe08g0470 Hepe-Chr8:4123596 1.01e-304 tandem
Hepe02g0216 Hepe-Chr2:2151152 Hepe08g0469 Hepe-Chr8:4093183 0.0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0469 K05387 - csv:101215715 1621.29