Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0470 ATGGAGGTGTTTTGGATTTGGAGGAGTGACCATTGGGTCAAAACCAGAGTGCTTCTGTTTGCATTGTTCTTTGGGATGTGGATGCCTTTGGGAGTGATTGGTGTCTCTCGAAACACGAGCGTTTCTTCTTTGAATCCGAGGGTGTTGAACATTGGAGTTCTGTTCACTCTCGATTCGGTTATTGGAAGGTCTGCACAGCCTGCAATTTTAGCGGCCGTGGACGATGTCAATGCCGATAACAGCATTCTTCCTGGAACAAAGCTGAACATGATCTTACACGACACGAATTGCAGCGGATTTCTTGGAACTGTGGAAGCCTTGCAGCTGATGGAAGATGAAGTAGTTGCTACTATTGGGCCACAATCCTCGGGCATCGCTCACGTCATTTCCCATGTTATTAATGAACTCCATATACCGCTTCTATCATTTGGAGCTACAGATCCTACTTTGTCCGCACTACAATACCCGTATTTCGTTCGGACCACACAGAGTGATTACTTCCAGATGAATGCAATTGCTGATATGATAGATTATTTTGGATGGAGAGAGGTCATTGCCATCTTTGTAGATGATGATAATGGCAGAAGCGGGATATCGGCATTGAGCGATGCCTTGGCAAAGAAGCGAGCCAGGATCTCTTATAAGGCTGCCTTCTCTCCTGGATCCCCGGCTAGCGCGATAAGTGACTTATTGGTTTCGGTAAACCTCATGGAATCTCGGGTGTATATTGTACATGTTAATCCTGACACTGGTTTATCAGTATTTTCAATTGCTAAGAAACTTCAGATGATGGGCAGTGGCTATGTCTGGATTGCAACCGATTGGCTTCCTTCCTTTCTCGATTCTTTTGAAACAAATAATCCTGATGTAATGAATCAGTTACAAGGCGTTGTTGCTCTTCGTCACCACACCCCCGACAGCGATCTGAAGAAAAACTTCTACTCCAAGTGGAAGAATCTAAAATACAAGAAGAGTCCAAACTTCAACTCTTATGCACTCTATGCATATGACTCTGTTTGGTTAGCAGCCCGTGCTCTCGACACATTCTTTAAAGAAGGTGGCAATGTATCTTTTTCTAGTGACCCAAAGTTACGTGAAAACAATGGAAGCATGCTGCACTTAACATCACTTCGAGTTTTTAATGGCGGCGAACAACTTCTACATACAATTAAGAGAACGAACTTCACGGGCGTAAGTGGGCGGATTCAATTTGGTGATGACAGAAATTTGATTCATCCAGCCTATGATATCCTGAACATTGGGGGAACTGGTTTGCGTAGAATTGGTTACTGGTCAAATTATTCTGGTCTATCCACTATTGCACCAGAGAACTTACATCCAAAGCCTCTTAATGCTTCCCCAAATAACCATCTCTACAGTGTAATATGGCCGGGTGAAGTAGCAACTGTTCCTCGAGGCTGGGTGTTCCCGCACAACGGGAAACCGTTGCAAATTGTAGTACCTAACCGTGTGAGTTACAAGGCGTTTGTGTCTAAAGACAAGAACCCTCCAGGAGTTAAAGGATATTGTATAGATGTCTTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACACATATATATTATATGGAGATGGAAAGGACACTCCTGAGTACAGCACTCTTGTATATGAAGTTTCACAGAATAAATACGATGCAGCTGTTGGTGATATTACGATTGTAACGAATAGGACGAAGATTGTGGACTTCACACAACCATTTATGGAGTCGGGACTCGTCGTAGTTACTGTCGTCAAAGAGGAGAAGTCCAGTCCATGGGCTTTTCTCAGGCCGTTTACTGTTCAAATGTGGGCTGTCACTGCAATATTCTTTATTTTTGTTGGAGCAGTTGTCTGGATTCTCGAGCACCGGACTAATGAAGAGTTCCGTGGTCCACCAAGGCAACAACTAATGACAATATTTTGGTTTAGTTTCTCGACGATGTTCTTTTCTCACAAGGAAAATACCGTAAGCACCCTCGGACGGATGGTGCTGATAATATGGCTCTTTGTTGTGTTAATTATCAATTCGAGCTACACAGCTAGTTTGACGTCGATCTTAACAGTGCAGCAGCTAACGTCAAAGATTGAAGGGGTTGATAGCTTAATCTCTAGCACAGATGCCATTGGAGTTCAAGAAGGGTCATTTGCATTGAATTATCTGATTGATGAGCTGAATATTGCACCATCTAGGATCATTAATTTGAAAAGTCAGGAGGAATATGTCGATGCTCTTCAGCGTGGACCGGGAAAGGGCGGGGTTGCTGCCATTGTGGATGAGCTTCCTTACGTTGAGCTTTTCTTGGCCGGTACAAATTGCATATTCAGGACAGTTGGACAGGAGTTCACAAAAAGTGGTTGGGGATTTGCATTCCAAAGGGACTCTCCTCTTGCAATTGATTTGTCAACAGCCATTCTTCAACTCTCAGAGAATGGTGATCTTCAAAAGATCCACGACAAATGGCTCTCACGAACCGAGTGTTCGATGAGCCTTAACCAAGTCGACGTAAACCAACTATCACTGAGTAGCTTTTGGGGATTGTTCCTAATTTGTGGTGTTGCTTGCTCTGGTGCTCTTTTGATATTCTTCTTTAGAGTACTACTCGAATACAGAAGATTTACCCCGGAAACTCAGCCTGACGTCGAGGATATCGAACCTGTTAGGACGAGACGCCTTAGTCGTACAACCAGCTTCATGCACTTTGTAGATAAAAAAGAAGTCAAAAAGCCTAAAAGAAAATCCACTGATACCAAACATGATACCAAACAAGCTAGCCAGAGCTCAGAGGATCACCTTGATTCACCACCTCTTTAG 2820 43.55 MEVFWIWRSDHWVKTRVLLFALFFGMWMPLGVIGVSRNTSVSSLNPRVLNIGVLFTLDSVIGRSAQPAILAAVDDVNADNSILPGTKLNMILHDTNCSGFLGTVEALQLMEDEVVATIGPQSSGIAHVISHVINELHIPLLSFGATDPTLSALQYPYFVRTTQSDYFQMNAIADMIDYFGWREVIAIFVDDDNGRSGISALSDALAKKRARISYKAAFSPGSPASAISDLLVSVNLMESRVYIVHVNPDTGLSVFSIAKKLQMMGSGYVWIATDWLPSFLDSFETNNPDVMNQLQGVVALRHHTPDSDLKKNFYSKWKNLKYKKSPNFNSYALYAYDSVWLAARALDTFFKEGGNVSFSSDPKLRENNGSMLHLTSLRVFNGGEQLLHTIKRTNFTGVSGRIQFGDDRNLIHPAYDILNIGGTGLRRIGYWSNYSGLSTIAPENLHPKPLNASPNNHLYSVIWPGEVATVPRGWVFPHNGKPLQIVVPNRVSYKAFVSKDKNPPGVKGYCIDVFEAAINLLPYPVPHTYILYGDGKDTPEYSTLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKEEKSSPWAFLRPFTVQMWAVTAIFFIFVGAVVWILEHRTNEEFRGPPRQQLMTIFWFSFSTMFFSHKENTVSTLGRMVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGVDSLISSTDAIGVQEGSFALNYLIDELNIAPSRIINLKSQEEYVDALQRGPGKGGVAAIVDELPYVELFLAGTNCIFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHDKWLSRTECSMSLNQVDVNQLSLSSFWGLFLICGVACSGALLIFFFRVLLEYRRFTPETQPDVEDIEPVRTRRLSRTTSFMHFVDKKEVKKPKRKSTDTKHDTKQASQSSEDHLDSPPL 939
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4123596 4128482 + Hsped.08g04700.1 Hepe08g0470 576442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0470 939 Gene3D - 777 831 - -
Hepe08g0470 939 Gene3D - 68 412 - -
Hepe08g0470 939 FunFam Glutamate receptor 478 594 - -
Hepe08g0470 939 Pfam Ligand-gated ion channel 603 857 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Hepe08g0470 939 Gene3D - 164 437 - -
Hepe08g0470 939 SMART GluR_14 484 826 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Hepe08g0470 939 FunFam Glutamate receptor 594 724 - -
Hepe08g0470 939 PIRSF IGluLR_plant 13 937 IPR017103 -
Hepe08g0470 939 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 62 78 - -
Hepe08g0470 939 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 253 276 - -
Hepe08g0470 939 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 122 150 - -
Hepe08g0470 939 Gene3D - 593 722 - -
Hepe08g0470 939 MobiDBLite consensus disorder prediction 901 929 - -
Hepe08g0470 939 CDD GluR_Plant 481 824 - -
Hepe08g0470 939 MobiDBLite consensus disorder prediction 901 939 - -
Hepe08g0470 939 SUPERFAMILY Periplasmic binding protein-like II 459 825 - -
Hepe08g0470 939 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 50 918 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Hepe08g0470 939 CDD PBP1_GABAb_receptor_plant 50 438 IPR044440 -
Hepe08g0470 939 SUPERFAMILY Periplasmic binding protein-like I 45 475 IPR028082 -
Hepe08g0470 939 Gene3D - 477 592 - -
Hepe08g0470 939 FunFam Glutamate receptor 164 324 - -
Hepe08g0470 939 FunFam Glutamate receptor 720 828 - -
Hepe08g0470 939 Pfam Receptor family ligand binding region 65 422 IPR001828 -
Hepe08g0470 939 Pfam Ligated ion channel L-glutamate- and glycine-binding site 502 585 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2354 Hepe-Chr1:88051313 Hepe08g0470 Hepe-Chr8:4123596 0.0 dispersed
Hepe02g0216 Hepe-Chr2:2151152 Hepe08g0470 Hepe-Chr8:4123596 7.38e-315 dispersed
Hepe04g1674 Hepe-Chr4:71943103 Hepe08g0470 Hepe-Chr8:4123596 0.0 dispersed
Hepe08g0470 Hepe-Chr8:4123596 Hepe08g1459 Hepe-Chr8:17686919 6.36e-159 dispersed
Hepe08g0469 Hepe-Chr8:4093183 Hepe08g0470 Hepe-Chr8:4123596 1.01e-304 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0470 K05387 - csv:101215485 1656.34