Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0472 ATGTTCCAGCAAAGCATGATGGACGGTCAGCTCCTCCCCTTAGACATGCCTCAAAACACTTCCGAAAGCGATCTTGCTCGAATCAGAGACGACGACTTCGACAGCGCTACTAAATCCGGCAGCGACAATAACAACCATGAACTCGGCTCTGGCGACGACGGTGACCCTCGTCCTAAAAAGAAACGTTACCACCGTCATACACAAAATCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAATGTCCTCACCCTGATGACAAACAAAGGAAGGAATTAAGCAGGGAATTAGGGTTAGAACCATTGCAAGTCAAATTCTGGTTCCAAAACAAACGCACTCAAATGAAGAATCAACACGAGAGGCATGAGAACACCCAACTTCGAACAGAAAATGAGAAGCTTCGAGCTGATAATATGAGATACAGAGAAGCCCTTAGCAATGCCTCATGCCCTAATTGTGGTGGCCCTACTGCCATTGGCGAAATGTCCTTCGACGAACATCATCTTAGACTCGAAAATGCCCGTCTCCGCGAAGAGATTGATCGCATTTCAGCAATAGCTGCAAAATACGTGGGGAAGCCAGTAGTGAACTACCCTCTACTATCTCCACCAGTTCCACCTCGAGCACTCGAGCTTGGAATGGGGAACTTCGGACCACAAGCAGGCCTCGGAGGAGACATGTATGGGTCGGCCGGTGAGCTAATCCGATCCATCAGCGGGCCGACAGAGGCTGACAAGCCGATGATCATCGAGCTTGCAGTTGCAGCGATGGAGGAGCTGAGTAGAATGGCTCAGATGGGCGAGCCATTGTGGATGAGTAGCCTGGATGGATCCACGAATGTGCTGAATGAAGATGAGTACTTGAGATCGTTTCCTAGAGGCATTGGGCCTAAGCCATCTGGGTTTAAATCTGAAGCCTCTCGTGAATCTGCTGTTGTCATCATGAATCATATTAACCTTGTTGAGATTCTCATGGACGTGAATCAATGGTCGACTTTATTTTCTGGAATTGTGTCTAGAGCTATGACACTTGAAGTGTTATCAACCGGAGTTGCTGGAAATTACAATGGAGCTTTGCAAGTTATGACGTCGGAATTTCAAGTTCCGTCGCCACTAGTTCCAACCCGGGAGAGCTACTACGTTAGGTATTGCAAACAACACGCGGACGGGACGTGGGCGGTGGTGGATGTTTCATTGGATGATCTTCGCCCTACCCCGGGACTTAGATGCCGAAGAAGACCGTCGGGTTGTTTGATCCAAGAAATGCCAAATGGATATTCAAAGGTTACCTGGGTTGAGCATGTAGAGGTGGATGATAGAGGAGTTCATAATCTTTACAAGCAACTGGTTAGCTCTGGCCAAGCTTTTGGTGCAAAACGTTGGGTTACAACTTTAGATCGCCAATGTGAACGACTTGCCAGTGCCATGGCTACCAATATTCCAACCGGTGATGTTGGAGTGATAACAAACCAAGAAGGGAGAAAGAGCATGTTGAAGCTGGCTGAGAGAATGGTGATAAGCTTCTGTGCTGGAGTGAGCGCCTCCACAACCCACACATGGACTACTCTCTCGGGTACGGGCGCCGACGACGTTCGTGTCATGACTCGAAAGAGCATCGACGATCCGGGAAGACCTCCTGGCATCGTCTTGAGTGCTGCAACTTCCTTCTGGCTCCCCGTTCCACCCAAGAGAATCTTTGATTTCCTCCGAGATGAAAACTCTCGCAGCGAGTGGGACATTCTATCAAATGGTGGAGTAGTTCAAGAAATGGCCCATATTGCCAATGGCCGCGACACTGGCAATTGCGTATCTTTGCTGCGTGTGAACAGCGCAAATTCAAGCCAAAGCAACATGCTAATCCTGCAAGAAAGCTGCACAGACGCAACAGCATCGTTCGTGATCTACGCTCCGGTCGACATTGTCGCAATGAACGTGGTCCTCAACGGCGGAGATCCCGACTACGTGGCACTTCTCCCATCGGGATTCGCCATTCTTCCCGACGGCGGGGAAGAGAGTATTTCCGGTGGGGGGTCACTGCTGACGGTGGCATTTCAGATACTGGTGGATTCGGTGCCGACGGCGAAACTGTCACTAGGGTCAGTTGCAACGGTTAACAATCTGATTGCTTGTACGGTGGAGAGGATTAAAGCGTCATTATCATGTGAGACTGCCTAA 2172 49.45 MFQQSMMDGQLLPLDMPQNTSESDLARIRDDDFDSATKSGSDNNNHELGSGDDGDPRPKKKRYHRHTQNQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPPVPPRALELGMGNFGPQAGLGGDMYGSAGELIRSISGPTEADKPMIIELAVAAMEELSRMAQMGEPLWMSSLDGSTNVLNEDEYLRSFPRGIGPKPSGFKSEASRESAVVIMNHINLVEILMDVNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYYVRYCKQHADGTWAVVDVSLDDLRPTPGLRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCERLASAMATNIPTGDVGVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKRIFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDATASFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGGEESISGGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCETA 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4138873 4144568 - Hsped.08g04720.1 Hepe08g0472 576444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0472 723 Pfam Homeodomain 60 116 IPR001356 GO:0003677(InterPro)
Hepe08g0472 723 SUPERFAMILY Bet v1-like 489 715 - -
Hepe08g0472 723 SMART START_1 250 470 IPR002913 GO:0008289(InterPro)
Hepe08g0472 723 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 39 721 IPR042160 -
Hepe08g0472 723 CDD homeodomain 60 118 IPR001356 GO:0003677(InterPro)
Hepe08g0472 723 SUPERFAMILY Homeodomain-like 52 121 IPR009057 -
Hepe08g0472 723 CDD START_ArGLABRA2_like 245 469 - -
Hepe08g0472 723 SMART HOX_1 58 121 IPR001356 GO:0003677(InterPro)
Hepe08g0472 723 Pfam START domain 251 470 IPR002913 GO:0008289(InterPro)
Hepe08g0472 723 Gene3D - 49 134 - -
Hepe08g0472 723 SUPERFAMILY Bet v1-like 241 472 - -
Hepe08g0472 723 Coils Coil 111 143 - -
Hepe08g0472 723 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe08g0472 723 FunFam Homeobox-leucine zipper protein HDG1 45 133 - -
Hepe08g0472 723 FunFam Homeobox-leucine zipper protein GLABRA 2 250 469 - -
Hepe08g0472 723 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677(InterPro)
Hepe08g0472 723 ProSiteProfiles START domain profile. 241 473 IPR002913 GO:0008289(InterPro)
Hepe08g0472 723 MobiDBLite consensus disorder prediction 1 67 - -
Hepe08g0472 723 Gene3D - 300 469 IPR023393 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0511 Hepe-Chr3:8847067 Hepe08g0472 Hepe-Chr8:4138873 4.25e-258 dispersed
Hepe05g1917 Hepe-Chr5:69520936 Hepe08g0472 Hepe-Chr8:4138873 3.42e-208 dispersed
Hepe07g2556 Hepe-Chr7:70005103 Hepe08g0472 Hepe-Chr8:4138873 1.32e-214 dispersed
Hepe08g0472 Hepe-Chr8:4138873 Hepe10g0760 Hepe-Chr10:13508090 1.42e-12 dispersed
Hepe01g1298 Hepe-Chr1:78181203 Hepe08g0472 Hepe-Chr8:4138873 1.72e-127 wgd
Hepe02g0212 Hepe-Chr2:2108993 Hepe08g0472 Hepe-Chr8:4138873 0.0 wgd
Hepe04g1781 Hepe-Chr4:72715185 Hepe08g0472 Hepe-Chr8:4138873 0.0 wgd
Hepe07g2012 Hepe-Chr7:64331400 Hepe08g0472 Hepe-Chr8:4138873 0.0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56113 PF01852 START 7.30E-59 CL0209 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0472 K09338 - csv:101214763 1348.18