Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe08g0474 | ATGGGAATGGAGACCTTCAATAAGCAGATACAAGAGGTTGAGGTACAAGTAGATAAGCTCTCTGGGCTTCTTATTAAACTGAAGGATGCTAATGAGGAATCAAAGTCTGTTACAAAAGCATCAGCGATGAAAGCTATCAAGAAGCGTATGGAAAAGGATATCGATGAAGTGGGAAAAATTGCACGAAATGTCAAAGTGAACCTGGAAACTGTAAATAAAGATAACTTAACAAGTAGGCAGAAGCCTGGATGCGAGAAGGGAACGGCCATTGACCGAGCACGAATGAATGTGACAAATGCCTTGACAAAAAAGTTCAAGGATCTGATGATAGAATTTCAGACCCTTCGTCAAAGAATTCAAGATGAGTACCGCGAAGTCGTGGAAAGACGAGTGATTACAGTTACGGGTACCAGACCAGATGAGACGATGATTGATCACCTTATAGAAACTGGAAACAGTGAGCAAATATTCCAAAATGCATTTGAACAAATGGGGCGAGGACAGGTTATCAGTACCGTGGAAGAAATTCAAGAGCGACACGACGCAGTTAAAGAAATCGAGAAAAGGCTCTCGGAATTGCATCAGATTTACCTTGACATGGCAGTTTTAGTGGAGGCCCAGAGTGAAATTTTGGATAACATAGAGAATCAGGTAACGAACGCAGTGGACCACGTTCGAACGGGAACCGATGCACTCGAGACAGCGAAGAGCTTACAGAAGAGATCAAGAAAATGCATGATGATCGCCATCATATTGCTGCTGGTTATAGCAATCATAATCGTCCTCTCAATTTTGAAACCATGGAAGAAGTAA | 813 | 42.07 | MGMETFNKQIQEVEVQVDKLSGLLIKLKDANEESKSVTKASAMKAIKKRMEKDIDEVGKIARNVKVNLETVNKDNLTSRQKPGCEKGTAIDRARMNVTNALTKKFKDLMIEFQTLRQRIQDEYREVVERRVITVTGTRPDETMIDHLIETGNSEQIFQNAFEQMGRGQVISTVEEIQERHDAVKEIEKRLSELHQIYLDMAVLVEAQSEILDNIENQVTNAVDHVRTGTDALETAKSLQKRSRKCMMIAIILLLVIAIIIVLSILKPWKK | 270 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 4173033 | 4176421 | + | Hsped.08g04740.1 | Hepe08g0474 | 576446 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe08g0474 | 270 | PANTHER | SYNTAXIN | 6 | 254 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Hepe08g0474 | 270 | Coils | Coil | 3 | 30 | - | - | |
Hepe08g0474 | 270 | Gene3D | - | 2 | 127 | - | - | |
Hepe08g0474 | 270 | CDD | SNARE_syntaxin1-like | 172 | 234 | - | - | |
Hepe08g0474 | 270 | Pfam | Syntaxin | 6 | 207 | IPR006011 | GO:0016020(InterPro) | |
Hepe08g0474 | 270 | CDD | SynN | 3 | 160 | IPR006011 | GO:0016020(InterPro) | |
Hepe08g0474 | 270 | SUPERFAMILY | t-snare proteins | 2 | 228 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Hepe08g0474 | 270 | SMART | tSNARE_6 | 168 | 235 | IPR000727 | - | |
Hepe08g0474 | 270 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 173 | 235 | IPR000727 | - | |
Hepe08g0474 | 270 | Pfam | SNARE domain | 209 | 261 | IPR000727 | - | |
Hepe08g0474 | 270 | Gene3D | - | 164 | 266 | - | - | |
Hepe08g0474 | 270 | FunFam | Syntaxin 132 | 166 | 266 | - | - | |
Hepe08g0474 | 270 | SMART | SynN_4 | 1 | 124 | IPR006011 | GO:0016020(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g2765 | Hepe-Chr2:76232596 | Hepe08g0474 | Hepe-Chr8:4173033 | 2.88e-100 | dispersed | |
Hepe07g1958 | Hepe-Chr7:63486193 | Hepe08g0474 | Hepe-Chr8:4173033 | 1.03e-65 | dispersed | |
Hepe08g0474 | Hepe-Chr8:4173033 | Hepe05g0449 | Hepe-Chr5:5903970 | 5.53e-68 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe08g0474 | K08486 | - | csv:101214355 | 464.151 |