Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0474 ATGGGAATGGAGACCTTCAATAAGCAGATACAAGAGGTTGAGGTACAAGTAGATAAGCTCTCTGGGCTTCTTATTAAACTGAAGGATGCTAATGAGGAATCAAAGTCTGTTACAAAAGCATCAGCGATGAAAGCTATCAAGAAGCGTATGGAAAAGGATATCGATGAAGTGGGAAAAATTGCACGAAATGTCAAAGTGAACCTGGAAACTGTAAATAAAGATAACTTAACAAGTAGGCAGAAGCCTGGATGCGAGAAGGGAACGGCCATTGACCGAGCACGAATGAATGTGACAAATGCCTTGACAAAAAAGTTCAAGGATCTGATGATAGAATTTCAGACCCTTCGTCAAAGAATTCAAGATGAGTACCGCGAAGTCGTGGAAAGACGAGTGATTACAGTTACGGGTACCAGACCAGATGAGACGATGATTGATCACCTTATAGAAACTGGAAACAGTGAGCAAATATTCCAAAATGCATTTGAACAAATGGGGCGAGGACAGGTTATCAGTACCGTGGAAGAAATTCAAGAGCGACACGACGCAGTTAAAGAAATCGAGAAAAGGCTCTCGGAATTGCATCAGATTTACCTTGACATGGCAGTTTTAGTGGAGGCCCAGAGTGAAATTTTGGATAACATAGAGAATCAGGTAACGAACGCAGTGGACCACGTTCGAACGGGAACCGATGCACTCGAGACAGCGAAGAGCTTACAGAAGAGATCAAGAAAATGCATGATGATCGCCATCATATTGCTGCTGGTTATAGCAATCATAATCGTCCTCTCAATTTTGAAACCATGGAAGAAGTAA 813 42.07 MGMETFNKQIQEVEVQVDKLSGLLIKLKDANEESKSVTKASAMKAIKKRMEKDIDEVGKIARNVKVNLETVNKDNLTSRQKPGCEKGTAIDRARMNVTNALTKKFKDLMIEFQTLRQRIQDEYREVVERRVITVTGTRPDETMIDHLIETGNSEQIFQNAFEQMGRGQVISTVEEIQERHDAVKEIEKRLSELHQIYLDMAVLVEAQSEILDNIENQVTNAVDHVRTGTDALETAKSLQKRSRKCMMIAIILLLVIAIIIVLSILKPWKK 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4173033 4176421 + Hsped.08g04740.1 Hepe08g0474 576446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0474 270 PANTHER SYNTAXIN 6 254 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Hepe08g0474 270 Coils Coil 3 30 - -
Hepe08g0474 270 Gene3D - 2 127 - -
Hepe08g0474 270 CDD SNARE_syntaxin1-like 172 234 - -
Hepe08g0474 270 Pfam Syntaxin 6 207 IPR006011 GO:0016020(InterPro)
Hepe08g0474 270 CDD SynN 3 160 IPR006011 GO:0016020(InterPro)
Hepe08g0474 270 SUPERFAMILY t-snare proteins 2 228 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Hepe08g0474 270 SMART tSNARE_6 168 235 IPR000727 -
Hepe08g0474 270 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 173 235 IPR000727 -
Hepe08g0474 270 Pfam SNARE domain 209 261 IPR000727 -
Hepe08g0474 270 Gene3D - 164 266 - -
Hepe08g0474 270 FunFam Syntaxin 132 166 266 - -
Hepe08g0474 270 SMART SynN_4 1 124 IPR006011 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2765 Hepe-Chr2:76232596 Hepe08g0474 Hepe-Chr8:4173033 2.88e-100 dispersed
Hepe07g1958 Hepe-Chr7:63486193 Hepe08g0474 Hepe-Chr8:4173033 1.03e-65 dispersed
Hepe08g0474 Hepe-Chr8:4173033 Hepe05g0449 Hepe-Chr5:5903970 5.53e-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0474 K08486 - csv:101214355 464.151