Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0487 ATGGACTACTACTCTGCAGGAAACTGGAATTGGCTCTTCGATTACTCTACGACGGATGATCTCGCCGTTTCCGGTGGCGACTTCTCACCCTCGCCGCCGCAGTCCATCAGTTTCACCTGGTCCAACCCCTCCATCGACTTTTCATCAAAAGACAGCCTTGAGGTAGACTGTTCATATGAAGATCTGGACAGCTTAAAGGAAGTGGGTCGGAAACGGCCAAGGGCTGAAACAAGTGCTGCATCTACCTCCAAAGCGTGCAGAGAAAAATTGAGGAGAGATAAGCTGAATGAGAGGTTCTTGGAATTGGCTGCTGTCCTGGAACCTGGAACACCACCCAAAACAGACAAGGTTGCAATCTTGAGTGATGCTATCAGAATGGTGACTGATTTACAATGTGAAACCCAGAAGCTGAAAGAATCGAAGGAGGATTTGAAGGAAAAAATTAAAGAATTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGGTTGAGAGCAGAGAAAGAAAAGTTGGAGCTGCAAATCAAAGCGGTGAATACTCGAGCAGCTGACATCCAGCATCCTCCCCCTACACTGTCAGCTGCATTTACAGCACAAGGGCAAGCTGCTGGTAACAAGTTGATGCCTTTCATTGGTTATCCTGGCATTGCCATGTGGCAGTTCTTGCCACCTGCAGCGGTCGACATATCACAGGATCACGTGCTCCGCCCACCAGTTGCTTAA 726 47.66 MDYYSAGNWNWLFDYSTTDDLAVSGGDFSPSPPQSISFTWSNPSIDFSSKDSLEVDCSYEDLDSLKEVGRKRPRAETSAASTSKACREKLRRDKLNERFLELAAVLEPGTPPKTDKVAILSDAIRMVTDLQCETQKLKESKEDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNTRAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPAAVDISQDHVLRPPVA 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4274991 4277661 - Hsped.08g04870.1 Hepe08g0487 576459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0487 241 SMART finulus 85 136 IPR011598 GO:0046983(InterPro)
Hepe08g0487 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 149 IPR036638 GO:0046983(InterPro)
Hepe08g0487 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 79 130 IPR011598 GO:0046983(InterPro)
Hepe08g0487 241 CDD bHLH_AtILR3_like 84 159 - -
Hepe08g0487 241 CDD bZIP 145 177 - -
Hepe08g0487 241 Pfam Helix-loop-helix DNA-binding domain 82 131 IPR011598 GO:0046983(InterPro)
Hepe08g0487 241 Gene3D - 82 159 IPR036638 GO:0046983(InterPro)
Hepe08g0487 241 FunFam Transcription factor bHLH34 70 128 - -
Hepe08g0487 241 PANTHER BHLH TRANSCRIPTION FACTOR 11 241 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Hepe08g0487 241 Coils Coil 127 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1646 Hepe-Chr5:66308257 Hepe08g0487 Hepe-Chr8:4274991 1.98e-28 dispersed
Hepe07g1156 Hepe-Chr7:25726839 Hepe08g0487 Hepe-Chr8:4274991 9.86e-59 dispersed
Hepe08g0487 Hepe-Chr8:4274991 Hepe08g1394 Hepe-Chr8:16413391 3.97e-28 dispersed
Hepe01g1311 Hepe-Chr1:78330567 Hepe08g0487 Hepe-Chr8:4274991 1.26e-60 wgd
Hepe07g1992 Hepe-Chr7:63950339 Hepe08g0487 Hepe-Chr8:4274991 7.62e-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56116 PF00010 HLH 3.60E-09 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0487 - - - 0.0