Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0488 ATGGTGATTCAGAGAGAAATGGAATGGAGAAGATCAAGTTATGTGGTTGTTTTTGTGACTCTCCTCTGTGCATTGGCAATTGCGAGTTCGGAGGGGAGAAGGAGGACGGTCGAAATGGTTCTCTCCAATGCCGGCGGCGATTGCCATCACACGTCGTCGGAATTGGAAGCAGATATGGGCGAGCAGGAGTGCATGAAAGAATTGGCATTGAAGGAATATGATGAAGCTGAAGAATTTGTTCCTTGCATCCAAAAAGAGAAGATGGATAAAGCTATAAGAATTCTTCCTCCTGACATGAAACATGACTTGTTGGATTGTTTAAGAAAGAAAACTATGCTTACTCGTGGTTCTGAACCACATTCTACCTTATTTGATTGGCTTGGCAAGACACTTGACTTGATCTTCGGAGCCTCCACCAATATTCACATCACACATCTAATTAGATCATCGCAAGATTCACCAACACCGCAGCCATCTCCATCTCCATCTCCTTCATCAGAAGAATCACCAGAAAATTCTCCATTACCATCTTCGAGTAAAGCTCCAATGCCATCGTCGAGTGATAATCCTGCCACGGCTCCATCACCAAAATCTCCCCGTGTCAAGGCTCCAGTACGGCCATCGCCACCGGACGATACCGATGTTTCGGATTCACCTCCATCTCCTGGAGTTCGCTCACCACCTCGTCCACGTGCTCCTCCCAAGTCTCGCTCTCCAAAGAATCAAGAAGAAAGCGAGACGGCTTCAGAGAATCAAGAAGAAAGCGAGATGGCTTTAGAGAATTATGAAGAAGACGAGACAGTCATAATTGCTTGTATTGTAGGAACTGGTGTGACAGTTATTCTTGTGGTTTTCCTGTTTTTGTTCTGCTGCGGTAGTGATGAGGAAAGTGATCAGGAAAGTGATCCGAAGGCTGGGCAAAAGGTTGAGAAACCTTTTCTCAACATACCTTTGAGCGAATTATCAGCTGGTTCTTCACAGAAGTCTTACAGCATTGGAAATACAGCTACCAAAGAGTTGAATGCTGGTAATGGAAATGGAAATAAACCAACCTCTTATGTTAGCAACTTATCAGTGAAGCCTGAAAATGGTACCTCTGTGGTTGAGTCTCCAACATCTGATGGTATATCACCAGCAATAATGCCACCTCTAAAACCCCCTCCTGGGAGACCAATTGCTCAGCCTCCTCCTCCACCTCCATCTGCATCTCCACCAGAACCAGAACCAGAACCAGAACCAGAACCAGAACCAGAACCAGCACCAGCACCAACACCAGCACCAGCACCAGCACCAGCACCAGCACCAGGGCCTCCTCCTCCTCTGCCACCTTCTCTTAACGCCCCACCGCCGCCACCCATGAAAGGTGTCCGGCCCCCACCTGCCCCACCACCGGCAATCCCGGGTAAATCTCAAGCAGGGCCTGTGGGGCCAAATCGGCGTGGAACCAGTGGCCCAAGTATGGATGCGGCGGATTCAGGAAAGACCAAGTTAAAGCCATTCTTTTGGGATAAGGTTCTTGCCAATCCTGGGCAATCCATGGTCTGGCACGAGATTAGTGATGGATCTTTCCAATTCAATGAGGAGATGATGGAGACTCTATTTGGATATACAGCTACGGATACAAACAAAGGCGAGCGCAAGAAAGATTTGAGTTTGGAACCTTCACTACAGTACATTCACATCATCGATGCTAGGAAAGCTCAAAACCTTTCAATTCTCCTACGAGCACTGAATGTGACAACAGCAGAAGTTGTGGATGCCATTCAAGAAGGCAACTCTCTTTCTCTATCAGAGCTTATACAGACATTGTTGAAGATGGCACCAACATCAGAAGAGGAACTGAAACTTAGATTATTTTCAGGGGATCTTTCTCAGATAGGTCCAGCAGAACGTTTCCTCAAAGTGTTGGTGGAGATTCCTTTTGCTTTTAAAAGATTAGAGTGTCTTCTCTTCATGATCTCAATGACGGAAGAAGTCACTAACATTAAAGAGGCATTCGCAACTCTACAGGTTGCTAGCGATAATCTCAGAAACAGCAGGCTATTTCTCAAGCTATTAGAAGCAGTTCTGAAAACTGGAAATCGAATGAACGTGGGGACGTACCGTGGCGGTGCTCAGGCGTTTAAGCTGGACACGCTCTTGAAACTGGCGGATGTTAAAGGAACCGACGGCAAGACTTCGCTCTTACAATTCGTGGTACAAGAGATTAGTCGTTCGGAGGGCATACGAGCAGCCCGCTCTAACAGAGAAAACCGAAGTTCTTCCAGCATAAGCGGCAGCGTGGATACAAGTTTCGAGGACTTGGGCGAGGATTCGGAGGAGCGTCATCGGCAATTAGGGCTTCAGGTGGTTTCTGGTTTGAGCACGGAGCTTAAGGACATTAAAAGAGCGGCAGCCGTAGATGGGGATGGGCTATCGTCGACGATATCGAAACTGGGGCAGTCTCTGTTAAAAAGCAAAGCATTTATAAACGCGGAGATGAAGAGTTTTGACGAAGACAGCAGATTCCAACAATCTCTGATGAAATTTTTGGAAGAAGCAGACGCGGACATTTCGTGGATTGCAGTGGAAGAAAAGAGGATAATGGCACTGGTGAAGAGCACGGTGGATTACTTCCATGGAAACTCTGTAAAGGACGAAGGATTGCGATTGTTTAGTACCGTACGCGACTTCCTGATTGTGTTGGACAAGACGTGTAAACAGGTTAAAGAAGCAGCTGATGCAGCAGCAAAGCAAGCGAAAGTTTCCAAAAAAGAAACTCGAACATTTTCGGTTCGTCAGCAGAATTCAGATCTACGGAAGCGGCTATTTCCGGCGATTGCAGAACGACGGGTTGACGAGGACTCGAGTTCTTCGGACGAGGAAGAAGACGGCGACGACGGCGATAGTTCTTCATCTTCATCATCCTAG 2910 47.04 MVIQREMEWRRSSYVVVFVTLLCALAIASSEGRRRTVEMVLSNAGGDCHHTSSELEADMGEQECMKELALKEYDEAEEFVPCIQKEKMDKAIRILPPDMKHDLLDCLRKKTMLTRGSEPHSTLFDWLGKTLDLIFGASTNIHITHLIRSSQDSPTPQPSPSPSPSSEESPENSPLPSSSKAPMPSSSDNPATAPSPKSPRVKAPVRPSPPDDTDVSDSPPSPGVRSPPRPRAPPKSRSPKNQEESETASENQEESEMALENYEEDETVIIACIVGTGVTVILVVFLFLFCCGSDEESDQESDPKAGQKVEKPFLNIPLSELSAGSSQKSYSIGNTATKELNAGNGNGNKPTSYVSNLSVKPENGTSVVESPTSDGISPAIMPPLKPPPGRPIAQPPPPPPSASPPEPEPEPEPEPEPEPAPAPTPAPAPAPAPAPGPPPPLPPSLNAPPPPPMKGVRPPPAPPPAIPGKSQAGPVGPNRRGTSGPSMDAADSGKTKLKPFFWDKVLANPGQSMVWHEISDGSFQFNEEMMETLFGYTATDTNKGERKKDLSLEPSLQYIHIIDARKAQNLSILLRALNVTTAEVVDAIQEGNSLSLSELIQTLLKMAPTSEEELKLRLFSGDLSQIGPAERFLKVLVEIPFAFKRLECLLFMISMTEEVTNIKEAFATLQVASDNLRNSRLFLKLLEAVLKTGNRMNVGTYRGGAQAFKLDTLLKLADVKGTDGKTSLLQFVVQEISRSEGIRAARSNRENRSSSSISGSVDTSFEDLGEDSEERHRQLGLQVVSGLSTELKDIKRAAAVDGDGLSSTISKLGQSLLKSKAFINAEMKSFDEDSRFQQSLMKFLEEADADISWIAVEEKRIMALVKSTVDYFHGNSVKDEGLRLFSTVRDFLIVLDKTCKQVKEAADAAAKQAKVSKKETRTFSVRQQNSDLRKRLFPAIAERRVDEDSSSSDEEEDGDDGDSSSSSSS 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4280551 4283924 + Hsped.08g04880.1 Hepe08g0488 576460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0488 969 SMART it6_source 487 928 IPR015425 -
Hepe08g0488 969 Pfam Formin Homology 2 Domain 492 894 IPR015425 -
Hepe08g0488 969 MobiDBLite consensus disorder prediction 337 373 - -
Hepe08g0488 969 SUPERFAMILY Formin homology 2 domain (FH2 domain) 557 914 - -
Hepe08g0488 969 MobiDBLite consensus disorder prediction 213 235 - -
Hepe08g0488 969 MobiDBLite consensus disorder prediction 743 769 - -
Hepe08g0488 969 MobiDBLite consensus disorder prediction 748 765 - -
Hepe08g0488 969 MobiDBLite consensus disorder prediction 380 408 - -
Hepe08g0488 969 MobiDBLite consensus disorder prediction 337 492 - -
Hepe08g0488 969 MobiDBLite consensus disorder prediction 170 194 - -
Hepe08g0488 969 MobiDBLite consensus disorder prediction 942 969 - -
Hepe08g0488 969 ProSiteProfiles Formin homology-2 (FH2) domain profile. 487 921 IPR015425 -
Hepe08g0488 969 Gene3D Formin, FH2 domain 498 935 IPR042201 -
Hepe08g0488 969 Coils Coil 245 265 - -
Hepe08g0488 969 MobiDBLite consensus disorder prediction 416 470 - -
Hepe08g0488 969 PANTHER FORMIN-RELATED 227 954 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Hepe08g0488 969 MobiDBLite consensus disorder prediction 155 169 - -
Hepe08g0488 969 MobiDBLite consensus disorder prediction 147 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0488 K28090 - - csv:101206094 723.005
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0488 Hepe-Chr8:4280551 Hepe10g1418 Hepe-Chr10:50844336 3.40e-109 dispersed
Hepe01g1315 Hepe-Chr1:78361316 Hepe08g0488 Hepe-Chr8:4280551 1.20e-157 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g937 Blo04g01082 Blo16g00351 . . . Bpe15g00301 . . . . Cma02g00531 . Car02g00366 . . . . . . . . . . . Cla01g01710 Cam01g1796 Cec04g1443 Cco04g1507 Clacu01g1821 Cmu01g1699 Cre04g1372 Cone6ag1454 Cone9ag1375 . . Lsi01g00902 . . Cme08g00643 . . Bda11g01477 . Bpe13g00127 . Bma03g01142 Bma06g00347 Sed14g0912 Cmo02g00543 . . . . . . Cpe05g01150 Bhi10g01479 Tan05g1655 Cmetu11g1138 . Hepe08g0488 . . Cla02g00812 Cam02g0859 Cec02g0866 Cco02g0897 Clacu02g0858 Cmu02g0849 Cre02g1167 . . . .
Vvi12g553 Blo02g00105 Blo15g00519 Bda06g00343 Bda13g00633 . . . . . . Cma02g00145 Cma20g00639 Car02g00124 Car20g00517 . . . . . . . . . . . . . . . . . . Cone10ag1297 . Cone12ag1403 . . . . . . . . Bpe14g00693 Bpe07g00592 Bma02g01338 Bma12g00784 Sed14g0912 Cmo02g00150 . . . . . Cpe16g00458 Cpe05g01457 Bhi10g01479 Tan05g1655 Cmetu11g1138 . Hepe08g0488 . . Cla02g00812 Cam02g0859 Cec02g0866 Cco02g0897 Clacu02g0858 Cmu02g0849 Cre02g1167 . . . Cme11g00755
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g1830 . 185 1049 FH2 protein (formin) Gene Family AT3G25500 51.9 7.5e-191 664.8
Hepe01g0233 . 487 933 FH2 protein (formin) Gene Family AT3G25500 67.1 5.3e-160 562.4
Hepe10g1418 . 462 884 FH2 protein (formin) Gene Family AT3G25500 63.7 1.4e-141 501.1
Hepe09g1587 . 495 898 FH2 protein (formin) Gene Family AT3G25500 50.8 1.1e-101 368.6
Hepe06g1830 . 623 1066 FH2 protein (formin) Gene Family AT2G43800 60.1 4.4e-139 492.7
Hepe10g1418 . 462 903 FH2 protein (formin) Gene Family AT2G43800 55.3 1.2e-125 448.0
Hepe08g0488 . 494 628 FH2 protein (formin) Gene Family AT4G15200 75.2 1.2e-47 188.0
Hepe01g1315 . 469 613 FH2 protein (formin) Gene Family AT4G15200 59.5 8.3e-41 165.2
Hepe08g1598 . 1 179 FH2 protein (formin) Gene Family AT1G24150 54.2 4.8e-45 179.5
Hepe01g1315 . 470 905 FH2 protein (formin) Gene Family AT5G54650 65.3 1.1e-155 547.7
Hepe08g0488 . 491 947 FH2 protein (formin) Gene Family AT5G54650 60.0 3.0e-148 523.1
Hepe06g1830 . 622 1024 FH2 protein (formin) Gene Family AT5G54650 50.4 3.6e-101 366.7
Hepe10g1418 . 29 903 FH2 protein (formin) Gene Family AT5G67470 56.8 4.6e-229 791.6
Hepe01g0233 . 494 929 FH2 protein (formin) Gene Family AT5G67470 62.2 1.8e-132 470.7
Hepe06g1830 . 599 1066 FH2 protein (formin) Gene Family AT5G67470 58.2 2.2e-130 463.8
Hepe09g1587 . 495 902 FH2 protein (formin) Gene Family AT5G67470 50.4 6.6e-103 372.5
Hepe10g1681 . 344 818 FH2 protein (formin) Gene Family AT1G59910 50.9 5.0e-122 436.0
Hepe06g1830 . 643 1025 FH2 protein (formin) Gene Family AT5G48360 51.9 5.0e-99 359.4
Hepe10g1418 . 466 860 FH2 protein (formin) Gene Family AT3G05470 51.4 3.4e-104 376.7
Hepe06g1830 . 625 1039 FH2 protein (formin) Gene Family AT3G05470 50.1 1.5e-99 361.3
Hepe06g1825 . 948 1259 FH2 protein (formin) Gene Family AT1G42980 50.8 3.0e-68 255.8
Hepe08g1059 . 153 321 FH2 protein (formin) Gene Family AT1G42980 55.9 7.7e-40 161.4
Hepe06g1825 . 1 1266 FH2 protein (formin) Gene Family AT1G31810 66.4 0.0e+00 1216.4
Hepe08g1059 . 72 321 FH2 protein (formin) Gene Family AT1G31810 82.5 2.0e-110 397.9
Hepe09g0095 . 1418 1739 FH2 protein (formin) Gene Family AT5G07650 70.8 2.4e-125 446.8
Hepe07g2489 . 989 1308 FH2 protein (formin) Gene Family AT5G07650 67.8 9.2e-117 418.3
Hepe01g1968 . 1250 1580 FH2 protein (formin) Gene Family AT5G07650 61.6 1.4e-109 394.4
Hepe06g1825 . 932 1263 FH2 protein (formin) Gene Family AT5G07650 59.9 1.2e-108 391.3
Hepe09g0582 . 885 1204 FH2 protein (formin) Gene Family AT5G07650 61.4 3.9e-107 386.3
Hepe08g1059 . 140 321 FH2 protein (formin) Gene Family AT5G07650 61.7 1.1e-58 225.3
Hepe09g0095 . 1345 1729 FH2 protein (formin) Gene Family AT5G07770 67.1 2.1e-137 486.5
Hepe07g2489 . 905 1307 FH2 protein (formin) Gene Family AT5G07770 60.9 4.6e-129 458.8
Hepe01g1968 . 1191 1579 FH2 protein (formin) Gene Family AT5G07770 57.9 6.2e-118 421.8
Hepe06g1825 . 868 1257 FH2 protein (formin) Gene Family AT5G07770 55.5 1.7e-115 413.7
Hepe09g0582 . 808 1196 FH2 protein (formin) Gene Family AT5G07770 56.2 2.4e-114 409.8
Hepe08g1059 . 74 321 FH2 protein (formin) Gene Family AT5G07770 57.6 1.1e-71 268.1
Hepe01g1968 . 1166 1580 FH2 protein (formin) Gene Family AT3G32400 73.6 7.2e-168 587.4
Hepe09g0582 . 781 1203 FH2 protein (formin) Gene Family AT3G32400 64.3 2.0e-146 516.2
Hepe06g1825 . 868 1262 FH2 protein (formin) Gene Family AT3G32400 65.7 8.3e-140 494.2
Hepe09g0095 . 1345 1739 FH2 protein (formin) Gene Family AT3G32400 63.0 1.1e-136 483.8
Hepe07g2489 . 882 1304 FH2 protein (formin) Gene Family AT3G32400 58.0 2.4e-131 466.1
Hepe08g1059 . 74 321 FH2 protein (formin) Gene Family AT3G32400 68.1 1.7e-92 337.0
Hepe09g0582 . 1 1203 FH2 protein (formin) Gene Family AT2G25050 53.4 4.2e-291 998.0
Hepe08g1059 . 74 321 FH2 protein (formin) Gene Family AT2G25050 62.5 1.2e-88 325.5
Hepe09g0095 . 1346 1739 FH2 protein (formin) Gene Family AT5G07780 61.3 6.2e-121 431.4
Hepe07g2489 . 913 1303 FH2 protein (formin) Gene Family AT5G07780 57.5 1.7e-110 396.7
Hepe01g1968 . 1192 1580 FH2 protein (formin) Gene Family AT5G07780 53.8 9.0e-104 374.4
Hepe06g1825 . 869 1258 FH2 protein (formin) Gene Family AT5G07780 52.7 4.5e-103 372.1
Hepe09g0582 . 815 1196 FH2 protein (formin) Gene Family AT5G07780 52.5 1.1e-98 357.5
Hepe08g1059 . 75 321 FH2 protein (formin) Gene Family AT5G07780 50.8 3.6e-60 229.6
Hepe09g0095 . 1 1746 FH2 protein (formin) Gene Family AT5G07740 57.3 7.9e-314 1073.9
Hepe08g1059 . 60 321 FH2 protein (formin) Gene Family AT5G07740 62.5 9.2e-87 319.7
Hepe09g0095 . 1417 1746 FH2 protein (formin) Gene Family AT5G07760 70.8 2.5e-123 440.3
Hepe07g2489 . 988 1303 FH2 protein (formin) Gene Family AT5G07760 68.8 1.1e-115 414.8
Hepe01g1968 . 1264 1580 FH2 protein (formin) Gene Family AT5G07760 64.5 2.7e-109 393.7
Hepe09g0582 . 884 1204 FH2 protein (formin) Gene Family AT5G07760 63.2 1.5e-107 387.9
Hepe06g1825 . 942 1263 FH2 protein (formin) Gene Family AT5G07760 61.3 9.5e-107 385.2
Hepe08g1059 . 152 321 FH2 protein (formin) Gene Family AT5G07760 64.1 5.1e-60 229.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001056 4 3 4 4 4 2 4 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 3 2 2 3 3 2 81