Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe08g0491 | ATGTCCCCATCCATGGCTTCTTCTTCCGTGTCTTTTGCTTGTTTTCTTGGCTTCTTTCTGGCTATTTTGATGGTGGGTTCCGTCGAATCCAGAAATTTTCACGAGCTTTTCCAGCCAAGCTGGGCTTTCGATCATTTCATCTATGAAGGAGAGCTTCTTAAGCTTAGACTCGACAACTCTTCTGGTGCTGGGTTTTCCTCCAAGAGCAAGTACATGTTTGGAAAAGTCACGATCCAAATAAAACTCATAGAGGGTGACTCTGCTGGAACTGTCACCGCATTCTATATGTCATCAGACGGCCCAAATCACAATGAATTCGACTTCGAGTTTCTGGGGAATACCACAGGCGAACCTTACTCTGTTCAAACCAACGTGTACGTCAACGGCGTTGGCAACAGAGAGCAGAGATTAAACCTCTGGTTTGACCCAACCAAAGACTTCCACTCCTATTCCATCTTCTGGAATCGCCGCCAAGTCATATTCCTTGTGGACGAAACCCCAATCAGGGTACATACAAATTTGGAGCACAGAGGCATACCCTTCCCGAAGGATCAAGCGATGGGTGTATACAGCTCGATATGGAACGCCGATGATTGGGCAACGCAGGGGGGTCGGGTGAAGACGAATTGGGCCCACGCACCGTTTTTTGCAGCGTACAAAGGGTTCGATATCGACGGTTGTGAGTGCCCGGTGGCGGTGGCTGCAGCGGACGTTGCTCGGAAGTGCAGCAGCGATGGGGAGAAGAAGTATTGGTGGGATGCTCCAACAATGTCGGAGCTGAATTTGCACCAAAGTCATCAGCTGCTATGGGTTAGGGCGAAGCATATGGTTTATGACTACTGTACGGACAGCGCTAGGTTCCCTGTTACTCCTGCTGAGTGCGGTTCCCCGTTCGTCCGCTTTGTCGTCGTCAACGCGACCGTCTTTGAAGTCTATGGCTCTCTAGAATCGGAATGTCCGTCCTTTGTTCGACGTCGCAAATTTAGGAACTTCTTCACCGCAGAAAAGGAGTCCAATCTAAACATTTCTTGGATGCCTAAATTGGAAAAATTACAAACTAGACGGCCTGGATCTTCATCCTTGGCCGATACTCTTGCAAAATGGAAAGATTACAATGATCACCTTGATTCATGTAATGATGAGGCCAAACTCACCCGTAAAGTTCCAGCCAAGGGATCGAAGAAGGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATTTGCGATGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGCAAGTGGGTTGCAGAAATTCGGGCACCGAATAGGGGAAGCCGACTCTGGTTGGGTACGTTTCCATCAGCCATTGATGCTGCTCTTGCTTATGATGAAGCTGCAAGGGCCATGTATGGCACTTCTGCTCGCCTTAATTTTCCCAATATCTCAATTCCAACCTTGCTAAAAGAAAAGGAATCATCAACAAAAGATTCTCCTGAACCCAAGAGGTCTTCAATCTCTTTTTTAGGGTCAACTTCACTTAGTCTGAGTTCCGAGTCAACAATAACATCAGATCACTCTTGA | 1545 | 47.7 | MSPSMASSSVSFACFLGFFLAILMVGSVESRNFHELFQPSWAFDHFIYEGELLKLRLDNSSGAGFSSKSKYMFGKVTIQIKLIEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKDFHSYSIFWNRRQVIFLVDETPIRVHTNLEHRGIPFPKDQAMGVYSSIWNADDWATQGGRVKTNWAHAPFFAAYKGFDIDGCECPVAVAAADVARKCSSDGEKKYWWDAPTMSELNLHQSHQLLWVRAKHMVYDYCTDSARFPVTPAECGSPFVRFVVVNATVFEVYGSLESECPSFVRRRKFRNFFTAEKESNLNISWMPKLEKLQTRRPGSSSLADTLAKWKDYNDHLDSCNDEAKLTRKVPAKGSKKGCMKGKGGPENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPSAIDAALAYDEAARAMYGTSARLNFPNISIPTLLKEKESSTKDSPEPKRSSISFLGSTSLSLSSESTITSDHS | 514 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 4308153 | 4312875 | + | Hsped.08g04910.1 | Hepe08g0491 | 576463 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe08g0491 | 514 | MobiDBLite | consensus disorder prediction | 487 | 514 | - | - | |
Hepe08g0491 | 514 | SUPERFAMILY | Concanavalin A-like lectins/glucanases | 33 | 295 | IPR013320 | - | |
Hepe08g0491 | 514 | CDD | AP2 | 409 | 468 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g0491 | 514 | ProSiteProfiles | Glycosyl hydrolases family 16 (GH16) domain profile. | 3 | 219 | IPR000757 | GO:0004553(InterPro)|GO:0005975(InterPro) | |
Hepe08g0491 | 514 | Pfam | AP2 domain | 410 | 459 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g0491 | 514 | FunFam | Ethylene-responsive transcription factor 2 | 409 | 468 | - | - | |
Hepe08g0491 | 514 | Pfam | Xyloglucan endo-transglycosylase (XET) C-terminus | 248 | 294 | IPR010713 | GO:0005618(InterPro)|GO:0016762(InterPro)|GO:0044042(InterPro)|GO:0048046(InterPro) | |
Hepe08g0491 | 514 | SMART | rav1_2 | 410 | 473 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g0491 | 514 | MobiDBLite | consensus disorder prediction | 477 | 514 | - | - | |
Hepe08g0491 | 514 | Gene3D | - | 20 | 297 | - | - | |
Hepe08g0491 | 514 | Gene3D | AP2/ERF domain | 410 | 468 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g0491 | 514 | PRINTS | Ethylene responsive element binding protein signature | 433 | 449 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g0491 | 514 | PRINTS | Ethylene responsive element binding protein signature | 411 | 422 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g0491 | 514 | ProSiteProfiles | AP2/ERF domain profile. | 410 | 467 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe08g0491 | 514 | Pfam | Glycosyl hydrolases family 16 | 35 | 211 | IPR000757 | GO:0004553(InterPro)|GO:0005975(InterPro) | |
Hepe08g0491 | 514 | SUPERFAMILY | DNA-binding domain | 410 | 467 | IPR016177 | GO:0003677(InterPro) | |
Hepe08g0491 | 514 | CDD | GH16_XET | 30 | 294 | IPR016455 | GO:0010411(InterPro)|GO:0016762(InterPro)|GO:0042546(InterPro) | |
Hepe08g0491 | 514 | PANTHER | XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED | 24 | 294 | IPR044791 | GO:0004553(InterPro) | |
Hepe08g0491 | 514 | FunFam | Xyloglucan endotransglucosylase/hydrolase | 20 | 296 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g3302 | Hepe-Chr2:82612079 | Hepe08g0491 | Hepe-Chr8:4308153 | 5.33e-56 | dispersed | |
Hepe04g0720 | Hepe-Chr4:61080408 | Hepe08g0491 | Hepe-Chr8:4308153 | 6.44e-28 | dispersed | |
Hepe07g0588 | Hepe-Chr7:6386603 | Hepe08g0491 | Hepe-Chr8:4308153 | 3.79e-103 | dispersed | |
Hepe07g0589 | Hepe-Chr7:6404263 | Hepe08g0491 | Hepe-Chr8:4308153 | 8.88e-102 | dispersed | |
Hepe08g0491 | Hepe-Chr8:4308153 | Hepe09g0498 | Hepe-Chr9:4633968 | 2.31e-90 | dispersed | |
Hepe02g0201 | Hepe-Chr2:2056433 | Hepe08g0491 | Hepe-Chr8:4308153 | 5.38e-171 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56117 | PF00722 | Glyco_hydro_16 | 3.60E-55 | CL0004 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe08g0491 | K08235 | - | vvi:100248328 | 510.375 |