Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0491 ATGTCCCCATCCATGGCTTCTTCTTCCGTGTCTTTTGCTTGTTTTCTTGGCTTCTTTCTGGCTATTTTGATGGTGGGTTCCGTCGAATCCAGAAATTTTCACGAGCTTTTCCAGCCAAGCTGGGCTTTCGATCATTTCATCTATGAAGGAGAGCTTCTTAAGCTTAGACTCGACAACTCTTCTGGTGCTGGGTTTTCCTCCAAGAGCAAGTACATGTTTGGAAAAGTCACGATCCAAATAAAACTCATAGAGGGTGACTCTGCTGGAACTGTCACCGCATTCTATATGTCATCAGACGGCCCAAATCACAATGAATTCGACTTCGAGTTTCTGGGGAATACCACAGGCGAACCTTACTCTGTTCAAACCAACGTGTACGTCAACGGCGTTGGCAACAGAGAGCAGAGATTAAACCTCTGGTTTGACCCAACCAAAGACTTCCACTCCTATTCCATCTTCTGGAATCGCCGCCAAGTCATATTCCTTGTGGACGAAACCCCAATCAGGGTACATACAAATTTGGAGCACAGAGGCATACCCTTCCCGAAGGATCAAGCGATGGGTGTATACAGCTCGATATGGAACGCCGATGATTGGGCAACGCAGGGGGGTCGGGTGAAGACGAATTGGGCCCACGCACCGTTTTTTGCAGCGTACAAAGGGTTCGATATCGACGGTTGTGAGTGCCCGGTGGCGGTGGCTGCAGCGGACGTTGCTCGGAAGTGCAGCAGCGATGGGGAGAAGAAGTATTGGTGGGATGCTCCAACAATGTCGGAGCTGAATTTGCACCAAAGTCATCAGCTGCTATGGGTTAGGGCGAAGCATATGGTTTATGACTACTGTACGGACAGCGCTAGGTTCCCTGTTACTCCTGCTGAGTGCGGTTCCCCGTTCGTCCGCTTTGTCGTCGTCAACGCGACCGTCTTTGAAGTCTATGGCTCTCTAGAATCGGAATGTCCGTCCTTTGTTCGACGTCGCAAATTTAGGAACTTCTTCACCGCAGAAAAGGAGTCCAATCTAAACATTTCTTGGATGCCTAAATTGGAAAAATTACAAACTAGACGGCCTGGATCTTCATCCTTGGCCGATACTCTTGCAAAATGGAAAGATTACAATGATCACCTTGATTCATGTAATGATGAGGCCAAACTCACCCGTAAAGTTCCAGCCAAGGGATCGAAGAAGGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATTTGCGATGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGCAAGTGGGTTGCAGAAATTCGGGCACCGAATAGGGGAAGCCGACTCTGGTTGGGTACGTTTCCATCAGCCATTGATGCTGCTCTTGCTTATGATGAAGCTGCAAGGGCCATGTATGGCACTTCTGCTCGCCTTAATTTTCCCAATATCTCAATTCCAACCTTGCTAAAAGAAAAGGAATCATCAACAAAAGATTCTCCTGAACCCAAGAGGTCTTCAATCTCTTTTTTAGGGTCAACTTCACTTAGTCTGAGTTCCGAGTCAACAATAACATCAGATCACTCTTGA 1545 47.7 MSPSMASSSVSFACFLGFFLAILMVGSVESRNFHELFQPSWAFDHFIYEGELLKLRLDNSSGAGFSSKSKYMFGKVTIQIKLIEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKDFHSYSIFWNRRQVIFLVDETPIRVHTNLEHRGIPFPKDQAMGVYSSIWNADDWATQGGRVKTNWAHAPFFAAYKGFDIDGCECPVAVAAADVARKCSSDGEKKYWWDAPTMSELNLHQSHQLLWVRAKHMVYDYCTDSARFPVTPAECGSPFVRFVVVNATVFEVYGSLESECPSFVRRRKFRNFFTAEKESNLNISWMPKLEKLQTRRPGSSSLADTLAKWKDYNDHLDSCNDEAKLTRKVPAKGSKKGCMKGKGGPENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPSAIDAALAYDEAARAMYGTSARLNFPNISIPTLLKEKESSTKDSPEPKRSSISFLGSTSLSLSSESTITSDHS 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4308153 4312875 + Hsped.08g04910.1 Hepe08g0491 576463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0491 514 MobiDBLite consensus disorder prediction 487 514 - -
Hepe08g0491 514 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 295 IPR013320 -
Hepe08g0491 514 CDD AP2 409 468 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0491 514 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 3 219 IPR000757 GO:0004553(InterPro)|GO:0005975(InterPro)
Hepe08g0491 514 Pfam AP2 domain 410 459 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0491 514 FunFam Ethylene-responsive transcription factor 2 409 468 - -
Hepe08g0491 514 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 248 294 IPR010713 GO:0005618(InterPro)|GO:0016762(InterPro)|GO:0044042(InterPro)|GO:0048046(InterPro)
Hepe08g0491 514 SMART rav1_2 410 473 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0491 514 MobiDBLite consensus disorder prediction 477 514 - -
Hepe08g0491 514 Gene3D - 20 297 - -
Hepe08g0491 514 Gene3D AP2/ERF domain 410 468 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0491 514 PRINTS Ethylene responsive element binding protein signature 433 449 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0491 514 PRINTS Ethylene responsive element binding protein signature 411 422 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0491 514 ProSiteProfiles AP2/ERF domain profile. 410 467 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0491 514 Pfam Glycosyl hydrolases family 16 35 211 IPR000757 GO:0004553(InterPro)|GO:0005975(InterPro)
Hepe08g0491 514 SUPERFAMILY DNA-binding domain 410 467 IPR016177 GO:0003677(InterPro)
Hepe08g0491 514 CDD GH16_XET 30 294 IPR016455 GO:0010411(InterPro)|GO:0016762(InterPro)|GO:0042546(InterPro)
Hepe08g0491 514 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 24 294 IPR044791 GO:0004553(InterPro)
Hepe08g0491 514 FunFam Xyloglucan endotransglucosylase/hydrolase 20 296 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3302 Hepe-Chr2:82612079 Hepe08g0491 Hepe-Chr8:4308153 5.33e-56 dispersed
Hepe04g0720 Hepe-Chr4:61080408 Hepe08g0491 Hepe-Chr8:4308153 6.44e-28 dispersed
Hepe07g0588 Hepe-Chr7:6386603 Hepe08g0491 Hepe-Chr8:4308153 3.79e-103 dispersed
Hepe07g0589 Hepe-Chr7:6404263 Hepe08g0491 Hepe-Chr8:4308153 8.88e-102 dispersed
Hepe08g0491 Hepe-Chr8:4308153 Hepe09g0498 Hepe-Chr9:4633968 2.31e-90 dispersed
Hepe02g0201 Hepe-Chr2:2056433 Hepe08g0491 Hepe-Chr8:4308153 5.38e-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56117 PF00722 Glyco_hydro_16 3.60E-55 CL0004 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0491 K08235 - vvi:100248328 510.375