Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0511 ATGAGTTGGAATTCCTTCTACACCAGAGCCTCTAAGGCTTTTCATGACCATCCTTCCATCTCCAAGCTTCTCATCGTTTTCACTGTCAGTGGAGGTGGACTGGTGGCAACTACTACTGGCAAATCTCTGTATCATTCTGCATATGCTGATGCAGTCCAACAAGATGGTGACTTCAAGAAGAAGAAGGTGGTGGTGCTTGGAACAGGATGGGCTGGCACCAGCTTTTTGAAGAACATCAAGAGCTCCTCTTATGATGTTCATGTTATTTCTCCTCATAATTACTTTGCTTTCACCCCTTTGCTTCCTAGTGTCACTTGCGGCACGGTCGAAGCACGTAGCATTGTCGAACCAATTCGTTGCATCACAAAGAAGAAAGATTTTGTTGAGTTTAGGGAAGCTGAGTGCTATAAGATAGATGCAGAGAAGAAGAAGGTGTTCTGTCGATCAAGAGAAGACACAAATTTGGATGGCAAAGAAGAATTTTCTGTAGACTATGACTATCTGATAATAGCCATGGGAGCTAAATCTAACACTTTCAACACACCTGGAGTTGAGGAAAATGCTCACTTCTTGAAGGGAGTGGAAGATGCTCAGAAGATTCGTCAAACCGTAGTCGATTGTTTCGAGCGAGCCAACCTTCCAAATCTAAGTGAAGAGGAGAAGAAGAGAATTCTTCACTTTGTAATAGTTGGAGGAGGTCCAACTGGGGTGGAATTTGCAGCAGAGCTTCATGACTTTGCAGTTGAGGATTTAGCTAAGTTGTATCCTTCATTGAAAGACTACGTGAAAATAACCCTCCTAGAAGCAGGGGATCATATTTTGAACATGTTTGACAAGAGGATTACTGCTTTTGCTGAAGAAAAATTTAGAAGAGATGGGATTAATTTAAAAACTGGTTCCATGGTTGTGAAAGTAACTGATAAGGAAATCTCCACCAAAGAAAGAGTAACCGGTGAATTTGTGTCTGTTCCTTATGGAATGGTTGTTTGGTCTACCGGCATCGGCCCTCGTCCTCAAGTTGTTGATTTCATGAAGCAGATTGGTCAGACTAACAGAAGAGCTTTGGCGACCGATGAGTGGCTAAGGGTCGAAGGATGTGACGACGTCTTTGCTCTGGGTGATTGTGCAACCGTAAATCAAAGAAGTGTCATGGAAGATATTGCAGTCATATTCAGCAAGGCAGATAAGGACAATTCAGGAACTTTATCCCGGCAAAACTTTCAAGAAGTGGTTAAGGATATTTGTGAGAGGTACCCTCAAATAGAGATCTATCTGAAGAAGAAGAAGATGAAGAATTTTGCAGCTTTGTTGAAGAAGACGCAATTGGAAACACAGAAACCGTCGACCGAACTCGATATCGAAAGCTTTAAGTCCTTACTTTCCGAAGTCGATTCCCAGATGAAAAATCTGCCTGCTACTGCTCAAGTTGCTGCTCAACAAGGTGAATATCTTGCAAGTTGCTTCAACCGGATGGACCGGTGTGAAAAGTACCCTGAAGGCCCTCTCCGATTTAGAGGGACAGGACGCCACCGGTTTCATCCTTTCAGGTACAAGCATTTTGGGCAGTTTGCTCCTCTGGGGGGAGAAAAAACTGCAGCTCAACTACCTGGAGATTGGGTCTCAATTGGTTATGGCTCGCAGTGGCTTTGGTACTCTGTGTATGCAAGCAAGCTAGTAAGCTGGCGCACAAGGATTCTGGTTGTGTCAGATTGGGGTAGAAGATTCATATTTGGCAGGGATTCAAGCAGAATCTGA 1755 43.65 MSWNSFYTRASKAFHDHPSISKLLIVFTVSGGGLVATTTGKSLYHSAYADAVQQDGDFKKKKVVVLGTGWAGTSFLKNIKSSSYDVHVISPHNYFAFTPLLPSVTCGTVEARSIVEPIRCITKKKDFVEFREAECYKIDAEKKKVFCRSREDTNLDGKEEFSVDYDYLIIAMGAKSNTFNTPGVEENAHFLKGVEDAQKIRQTVVDCFERANLPNLSEEEKKRILHFVIVGGGPTGVEFAAELHDFAVEDLAKLYPSLKDYVKITLLEAGDHILNMFDKRITAFAEEKFRRDGINLKTGSMVVKVTDKEISTKERVTGEFVSVPYGMVVWSTGIGPRPQVVDFMKQIGQTNRRALATDEWLRVEGCDDVFALGDCATVNQRSVMEDIAVIFSKADKDNSGTLSRQNFQEVVKDICERYPQIEIYLKKKKMKNFAALLKKTQLETQKPSTELDIESFKSLLSEVDSQMKNLPATAQVAAQQGEYLASCFNRMDRCEKYPEGPLRFRGTGRHRFHPFRYKHFGQFAPLGGEKTAAQLPGDWVSIGYGSQWLWYSVYASKLVSWRTRILVVSDWGRRFIFGRDSSRI 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4483458 4486450 - Hsped.08g05110.1 Hepe08g0511 576483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0511 584 SUPERFAMILY EF-hand 340 430 IPR011992 -
Hepe08g0511 584 SUPERFAMILY FAD/NAD(P)-binding domain 60 278 IPR036188 -
Hepe08g0511 584 PANTHER NADH DEHYDROGENASE 47 584 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Hepe08g0511 584 ProSiteProfiles EF-hand calcium-binding domain profile. 382 417 IPR002048 GO:0005509(InterPro)
Hepe08g0511 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 428 583 - -
Hepe08g0511 584 SUPERFAMILY FAD/NAD(P)-binding domain 220 379 IPR036188 -
Hepe08g0511 584 Gene3D - 51 444 - -
Hepe08g0511 584 Pfam NDH2 C-terminal domain 519 580 IPR054585 -
Hepe08g0511 584 Pfam Pyridine nucleotide-disulphide oxidoreductase 61 380 IPR023753 GO:0016491(InterPro)
Hepe08g0511 584 Gene3D - 459 567 - -
Hepe08g0511 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 226 244 - -
Hepe08g0511 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 165 183 - -
Hepe08g0511 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 63 82 - -
Hepe08g0511 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 51 411 - -
Hepe08g0511 584 SMART efh_1 386 414 IPR002048 GO:0005509(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0511 Hepe-Chr8:4483458 Hepe08g0722 Hepe-Chr8:6512949 3.14e-63 dispersed
Hepe01g1109 Hepe-Chr1:75986454 Hepe08g0511 Hepe-Chr8:4483458 9.97e-07 transposed
Hepe02g0166 Hepe-Chr2:1760893 Hepe08g0511 Hepe-Chr8:4483458 4.61e-276 wgd
Hepe04g1825 Hepe-Chr4:73188383 Hepe08g0511 Hepe-Chr8:4483458 1.26e-74 wgd
Hepe07g1961 Hepe-Chr7:63504837 Hepe08g0511 Hepe-Chr8:4483458 0.0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0511 K03885 - csv:101209855 1075.08