Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0527 ATGCGGGTTGGATTCGTGGGCCCCAAAAGCATGGCCATTGGTTCAAAATCTCATCTTCCTCTTTTCTTCCAATTTATAAAAACCCATCCTCTCTTCTGTTTCTTCTTCACCTCTCTCAAATACCCACGTGGACTCTCCTCTGTTTTTGTTCATAATTTAACACAGCAACTTCGAATTCTCTATTCCCATTTCAACTCCAACTTATCTCTGAGAATAACTCAAGATATGGATGAAAATCATGACCCAATTCACCCATTGGATTCAATTTCTCATCACTCATTTCCTTTCTTGAATCCACCCTCCTCTGCTTCTCACGCTTCTCCTTCATCCGCAAGAGCTCTCTTTCCTTTTGCTTTGGAACCATCCCAATTTCCCCATCAATTCAAAACAGAGCCTGTGGCACCTATGGCTCATCGCCCATCAGTTCCGCCCCCGTTGGCGCCAACCCAATATGGATTTGGCTACCCGCCCTACTTCATGGGCGAGTTCGCATCGTTTCAACAACAGCAGCAACAACAACAACATCAGCAATTTCTTCAGTATTGGAATGAGTCTCTTGATTTAAACTCAAGGGCGGGGTTTAGGCCTCAAGTGCGGCCTTTAAACGCCACAAAGTTATACAGAGGAGTGAGGCAGAGACATTGGGGGAAATGGGTAGCTGAGATTCGTCTTCCTCGAAACAGGAACCGTCTCTGGCTTGGCACATTCGACACTGCGGAAGATGCTGCCTTGGCATACGATCGCGAGGCTTTCAAATTGAGAGGAGAGAATGCAAGGCTTAATTTTCCGGAAATGTTTCTGAATAAAGATAAAGAAGAAGCCTCGCAGACTTCTGGTGGGGAGCTGCCTCCTCAACAGGATCTAGACAACAATAACAATCTTGACAATGACATGGAATTAGAGTCCAATAATGAGGCCGTGGCAGAGGAGGATAACCCACAGGAGTCAGAAGGTGCGGCAGAGGGTATCTCAAAGTCACAGGAGATGATTTGGAGAGAAATGGCAGAGGCTTGGTTAAACGCGATGCCAGCCGGTTGGGGACCTGGGAGCCCTGTGTGGGACGATTTTGACACCACCAATAATCTCCTCTTGCAGCCACAGCTTCCTTTTGCTAACCCAATTCAGCAAGAATCATTTGGCACTGATCTCTTAACATCAGCTTCACCTTCTTCATCCTGCCCCATGAAGCCTTACTTTCTCAAAGATGAAGATTAA 1215 46.34 MRVGFVGPKSMAIGSKSHLPLFFQFIKTHPLFCFFFTSLKYPRGLSSVFVHNLTQQLRILYSHFNSNLSLRITQDMDENHDPIHPLDSISHHSFPFLNPPSSASHASPSSARALFPFALEPSQFPHQFKTEPVAPMAHRPSVPPPLAPTQYGFGYPPYFMGEFASFQQQQQQQQHQQFLQYWNESLDLNSRAGFRPQVRPLNATKLYRGVRQRHWGKWVAEIRLPRNRNRLWLGTFDTAEDAALAYDREAFKLRGENARLNFPEMFLNKDKEEASQTSGGELPPQQDLDNNNNLDNDMELESNNEAVAEEDNPQESEGAAEGISKSQEMIWREMAEAWLNAMPAGWGPGSPVWDDFDTTNNLLLQPQLPFANPIQQESFGTDLLTSASPSSSCPMKPYFLKDED 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4643040 4644254 + Hsped.08g05270.1 Hepe08g0527 576499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0527 404 PRINTS Ethylene responsive element binding protein signature 207 218 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0527 404 PRINTS Ethylene responsive element binding protein signature 229 245 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0527 404 Pfam AP2 domain 206 255 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0527 404 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 81 349 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Hepe08g0527 404 FunFam Ethylene-responsive transcription factor 2 205 264 - -
Hepe08g0527 404 MobiDBLite consensus disorder prediction 278 298 - -
Hepe08g0527 404 MobiDBLite consensus disorder prediction 382 404 - -
Hepe08g0527 404 ProSiteProfiles AP2/ERF domain profile. 206 263 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0527 404 MobiDBLite consensus disorder prediction 271 298 - -
Hepe08g0527 404 Gene3D AP2/ERF domain 206 265 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0527 404 CDD AP2 205 264 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe08g0527 404 SUPERFAMILY DNA-binding domain 206 264 IPR016177 GO:0003677(InterPro)
Hepe08g0527 404 SMART rav1_2 206 269 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0527 Hepe-Chr8:4643040 Hepe10g0515 Hepe-Chr10:5945996 8.31e-32 dispersed
Hepe02g0148 Hepe-Chr2:1630056 Hepe08g0527 Hepe-Chr8:4643040 9.11e-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56120 PF00847 AP2 5.10E-13 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0527 - - - 0.0