Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0533 ATGCAGCTCCTCCTCTGCCGCCGTGGTTATGGCCTCATTGGGGCTCTTTTCTTTGCCGCGGCAGTGCTTGAGTGGTTCACAGCGGCGGCTCAGCTCCAACACCGTGTGCCGGATCTACATTGGCTCCCGGCCACCGCCACGTGGTATGGAAGCGCCGAGGGCGACGGCAGTGACGGTGGAGCTTGTGGGTATGGTAATTTAGTGGATGTGAAGCCTCTAAAGGCAAGAGTTGGGGCTGTGAGTCCGATTCTGTTCAAAAATGGTGAAGGATGTGGGGCATGTTACAAAGTGAAGTGTTTAGACGAGAGAATTTGCTCTAGACGAGCAGTGACTATAATCGTCACCGACGAATGCCCCGGTGGGTATTGTTCCAATGGAAATACCCACTTCGATCTCAGCGGCGCCGCGTTTGGCCGTATGGCCATCGCCGGCGAAGGTGGGCCGCTCAGAAACCGAGGCGAACTCCCAGTAATTTACAGACGGACTCCGTGTAAATACCGAGGGAAGAACATTGCCTTCCATGTCAATGAAGGCTCGACAGATTACTGGCTCTCGCTCTTGGTTGAATTCGAGGATGGAGATGGAGACATCGGTTCAATGCAAATAAAAGAAGCAAACTCGGGGGAGTGGCTGGAGATGAACCATCTATGGGGGGCAAATTGGTGCATTATTGGTGGCCCTTTGAAAGGGCCATTTTCAGTGAGATTAACAACATTATCAACAGGAAGAAGTTTGTCAGCCAGGGATATAATTCCAAGGAATTGGTCTCCAAAAGCCACTTACACTTCCCGCCTTAATTTCTTCACTTAA 810 51.48 MQLLLCRRGYGLIGALFFAAAVLEWFTAAAQLQHRVPDLHWLPATATWYGSAEGDGSDGGACGYGNLVDVKPLKARVGAVSPILFKNGEGCGACYKVKCLDERICSRRAVTIIVTDECPGGYCSNGNTHFDLSGAAFGRMAIAGEGGPLRNRGELPVIYRRTPCKYRGKNIAFHVNEGSTDYWLSLLVEFEDGDGDIGSMQIKEANSGEWLEMNHLWGANWCIIGGPLKGPFSVRLTTLSTGRSLSARDIIPRNWSPKATYTSRLNFFT 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4667513 4669681 - Hsped.08g05330.1 Hepe08g0533 576505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0533 269 Gene3D - 166 268 IPR036749 -
Hepe08g0533 269 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576(InterPro)
Hepe08g0533 269 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576(InterPro)
Hepe08g0533 269 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576(InterPro)
Hepe08g0533 269 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576(InterPro)
Hepe08g0533 269 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576(InterPro)
Hepe08g0533 269 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576(InterPro)
Hepe08g0533 269 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe08g0533 269 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe08g0533 269 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe08g0533 269 PRINTS Major pollen allergen Lol pI signature 79 90 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe08g0533 269 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe08g0533 269 PRINTS Major pollen allergen Lol pI signature 239 256 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe08g0533 269 Gene3D - 27 165 IPR036908 -
Hepe08g0533 269 CDD DPBB_EXPB_N 41 164 - -
Hepe08g0533 269 SMART dpbb_1 77 159 IPR007112 -
Hepe08g0533 269 FunFam Beta-expansin 3 166 268 - -
Hepe08g0533 269 SUPERFAMILY Barwin-like endoglucanases 40 188 IPR036908 -
Hepe08g0533 269 PANTHER EXPANSIN-B3 27 267 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
Hepe08g0533 269 Pfam Expansin C-terminal domain 171 252 IPR007117 -
Hepe08g0533 269 SUPERFAMILY PHL pollen allergen 169 263 IPR036749 -
Hepe08g0533 269 Pfam Lytic transglycolase 79 151 IPR009009 -
Hepe08g0533 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 169 IPR007112 -
Hepe08g0533 269 FunFam Expansin B3 27 165 - -
Hepe08g0533 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 263 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g2086 Hepe-Chr5:71374530 Hepe08g0533 Hepe-Chr8:4667513 1.65e-72 dispersed
Hepe08g0533 Hepe-Chr8:4667513 Hepe01g0297 Hepe-Chr1:44162445 3.98e-18 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0533 K20628 - csv:101202998 504.982