Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe08g0544 ATGGGCTGCATCTGTTCTAAGGTTTTAGTGGATGGGTGTAGTAATCATGAACATGATAGCTCCAAAAGAGCATATTCCTCCAGAAAACACCTCTCTGAATTGAAGATTTCGAGAGCTGGCTCTCCAAAATCGGAGCAGATTTGGGGAAAAGATAGACTGGTCTGTGGTGATCTTAAGGTTATGTTGTTTGATACGAAGGCGAATGGTGACCCTCCTAATGAGAGGAAGAAAACTGAGATCCCTGATGTCACCATTTTCAATCAACCATGTATGGGAAGGATTCCGAAGGCTACCGAGGCCGAGCAGGTTGCTGCTGGGTGGCCGAGTTGGCTGGCTGGGGTGGCTGGTGAGGCTATCAAAGGATGGTTGCCAAAACGTACAAATAACTTCATCAAGTTAGAAAAAATTGGCCAGGGAACTTACAGCAGTGTGTATAAAGCTCGTGATATAATTCAAGATAAAGTTGTGGCCTTGAAAAAGGTCAGGTTCGACAATCAAGATACCGAGAGTATCAAGTTTATGGCAAGGGAAATCCTTGTTTTGCGAAGGCTTGATCATCCAAATATAATTAAGTTGGAAGGTTTGATCACATCACAAACATCATGTACCATGTACCTTGTTTTTGAATATATGGAACATGATCTTACAGGGCTTGCATCACGGCCTGGCACGTCGTTCACCGAACCACAGATGAAGTGTTACATGAAGCAACTTTTGAGTGGACTTGATCACTGTCACAGTAATGGGGTTCTGCATCGAGACATAAAGGGCTCAAATCTTCTTATTGACAACAACGGCATTTTGAAGATAGCAGATTTTGGGTTGTCTGTTCTCTTTGATTCTCAGTCTACGGTTCCCATGACGAGTCGTGTAATAACTCTCTGGTATCGACCACCAGAACTTTTACTTGGAGCATCTCAATATGGAGCTAAAGTTGATTTATGGAGCGCTGGTTGCATTCTAGGAGAGTTATACGCGGGCAAGCCTGTCTTGCCAGGAAAAACAGAGGTTGAACAACTGCATAAAATATTCAAGCTATGTGGTTCCCCCTCCAAGGAATATTGGAGCAAATTGCATTTGAAGCATTCAACAAGCATGACGCCTCCACAGTCGTACGAAAGATGTCTTCGAGAAATATTTAACGATTTTCCTCGTGCTGCTGTTGATCTTATGGACACTTTGCTGTCTATAGATCCTGCAGGGCGAGGAACCGCGGCTTCTGCACTCAACAGTGAGTTTTTTACTACAAGGCCCTTACCATGCGATCCTTCAAGTTTGCCAAAATACCCTCCCAGCAAAGAGATTGATTCAAAAATGCGCGAAGAGGAAGCAAGAAGGCAACGAGGAATAGGTGGTGGAAGAAGCCGAACAATTGACTCAGAAGGAAAAGGACTGAAGCAATCTCGGGTAGTTCCTACAGCAAAGGCCAATGCTGACTTGGTTATATCACTACTGAGAAAACAAAGTCATTCGATCTCAAAGTACCAGAGTGAAACATGTTCTTACGGTTTGGTGTCAAAAAGAACCTCAAATTCAGGACCTATAACTCGAGGACCAAGATTTGCAAACTCAAAAAAGGACCCTAAAAGCGTTTCTACGATTCCGTGCGCGTATTTAACATCATCTGGTCCTATTGAATTTGTTTCTTACAAACACGTCCGTGAAAGAAATGGAGTTTCAAGGCAGAATCATTGA 1695 43.24 MGCICSKVLVDGCSNHEHDSSKRAYSSRKHLSELKISRAGSPKSEQIWGKDRLVCGDLKVMLFDTKANGDPPNERKKTEIPDVTIFNQPCMGRIPKATEAEQVAAGWPSWLAGVAGEAIKGWLPKRTNNFIKLEKIGQGTYSSVYKARDIIQDKVVALKKVRFDNQDTESIKFMAREILVLRRLDHPNIIKLEGLITSQTSCTMYLVFEYMEHDLTGLASRPGTSFTEPQMKCYMKQLLSGLDHCHSNGVLHRDIKGSNLLIDNNGILKIADFGLSVLFDSQSTVPMTSRVITLWYRPPELLLGASQYGAKVDLWSAGCILGELYAGKPVLPGKTEVEQLHKIFKLCGSPSKEYWSKLHLKHSTSMTPPQSYERCLREIFNDFPRAAVDLMDTLLSIDPAGRGTAASALNSEFFTTRPLPCDPSSLPKYPPSKEIDSKMREEEARRQRGIGGGRSRTIDSEGKGLKQSRVVPTAKANADLVISLLRKQSHSISKYQSETCSYGLVSKRTSNSGPITRGPRFANSKKDPKSVSTIPCAYLTSSGPIEFVSYKHVRERNGVSRQNH 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4752757 4755473 + Hsped.08g05440.1 Hepe08g0544 576516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe08g0544 564 SUPERFAMILY Protein kinase-like (PK-like) 124 422 IPR011009 -
Hepe08g0544 564 Gene3D Phosphorylase Kinase; domain 1 117 212 - -
Hepe08g0544 564 FunFam probable serine/threonine-protein kinase At1g54610 117 212 - -
Hepe08g0544 564 Pfam Protein kinase domain 132 414 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g0544 564 PANTHER CELL DIVISION PROTEIN KINASE 130 414 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Hepe08g0544 564 MobiDBLite consensus disorder prediction 421 440 - -
Hepe08g0544 564 SMART serkin_6 130 414 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g0544 564 FunFam probable serine/threonine-protein kinase At1g54610 213 454 - -
Hepe08g0544 564 CDD STKc_CDK9_like 130 414 - -
Hepe08g0544 564 MobiDBLite consensus disorder prediction 445 468 - -
Hepe08g0544 564 ProSitePatterns Protein kinases ATP-binding region signature. 136 159 IPR017441 GO:0005524(InterPro)
Hepe08g0544 564 Gene3D Transferase(Phosphotransferase) domain 1 213 451 - -
Hepe08g0544 564 ProSiteProfiles Protein kinase domain profile. 130 414 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe08g0544 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0544 Hepe-Chr8:4752757 Hepe08g2381 Hepe-Chr8:64277137 4.55e-180 dispersed
Hepe08g0544 Hepe-Chr8:4752757 Hepe08g0545 Hepe-Chr8:4760355 2.14e-195 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73027 PF00069 Pkinase 5.30E-69 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe08g0544 - - - 0.0